WormBase Tree Display for Gene: WBGene00000139
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| WBGene00000139 | Evidence | Person_evidence | WBPerson508 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F25C8 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | amx-3 | Person_evidence | WBPerson508 | |||||
| Sequence_name | F25C8.2 | ||||||||
| Molecular_name | F25C8.2a | ||||||||
| F25C8.2a.1 | |||||||||
| CE52859 | |||||||||
| F25C8.2b | |||||||||
| CE45241 | |||||||||
| F25C8.2b.1 | |||||||||
| Other_name | CELE_F25C8.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | amx-3 | ||||||||
| DB_info | Database | AceView | gene | 5V368 | |||||
| WormQTL | gene | WBGene00000139 | |||||||
| WormFlux | gene | WBGene00000139 | |||||||
| NDB | locus_tag | CELE_F25C8.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000139|UniProtKB=E0AHD3 | |||||||
| family | PTHR10742 | ||||||||
| NCBI | gene | 184919 | |||||||
| RefSeq | protein | NM_001368491.3 | |||||||
| NM_001270035.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF318348 | |||||||
| TrEMBL | UniProtAcc | E0AHD4 | |||||||
| E0AHD3 | |||||||||
| UniProt_GCRP | UniProtAcc | E0AHD3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | amx | ||||||||
| Allele (98) | |||||||||
| Strain | WBStrain00032229 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00008019 | ||||||||
| 00106855 | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00016061 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000137 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000138 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00005010 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00011615 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019154 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable polyamine oxidase activity. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Is an ortholog of human PAOX (polyamine oxidase) and SMOX (spermine oxidase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:3908 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20837) | ||||
| Molecular_info | Corresponding_CDS | F25C8.2a | |||||||
| F25C8.2b | |||||||||
| Corresponding_CDS_history | F25C8.2:wp154 | ||||||||
| F25C8.2:wp176 | |||||||||
| F25C8.2:wp217 | |||||||||
| F25C8.2a:wp268 | |||||||||
| Corresponding_transcript | F25C8.2a.1 | ||||||||
| F25C8.2b.1 | |||||||||
| Other_sequence (13) | |||||||||
| Associated_feature | WBsf653637 | ||||||||
| WBsf653638 | |||||||||
| WBsf235241 | |||||||||
| WBsf235242 | |||||||||
| WBsf235243 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00045482 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00013857 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091510 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016133 | ||||||||
| Expr1030072 | |||||||||
| Expr1149399 | |||||||||
| Expr2009331 | |||||||||
| Expr2027567 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (137) | |||||||||
| Interaction | WBInteraction000169058 | ||||||||
| WBInteraction000169059 | |||||||||
| WBInteraction000169060 | |||||||||
| WBInteraction000169061 | |||||||||
| WBInteraction000169062 | |||||||||
| WBInteraction000169393 | |||||||||
| WBInteraction000169721 | |||||||||
| WBInteraction000221487 | |||||||||
| WBInteraction000335817 | |||||||||
| WBInteraction000439307 | |||||||||
| Map_info | Map | V | Position | 25.6311 | Error | 0.020715 | |||
| Positive | Positive_clone | F25C8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026287 | ||||||||
| WBPaper00030371 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
