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WormBase Tree Display for Gene: WBGene00003096

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Name Class

WBGene00003096SMapS_parentSequenceC02A12
IdentityVersion1
NameCGC_namelys-7Person_evidenceWBPerson168
Sequence_nameC02A12.4
Molecular_nameC02A12.4
C02A12.4.1
CE07828
Other_nameCELE_C02A12.4Accession_evidenceNDBBX284605
Public_namelys-7
DB_infoDatabaseAceViewgene5D960
WormQTLgeneWBGene00003096
WormFluxgeneWBGene00003096
NDBlocus_tagCELE_C02A12.4
PanthergeneCAEEL|WormBase=WBGene00003096|UniProtKB=O16202
familyPTHR23208
NCBIgene178772
RefSeqproteinNM_071571.9
SwissProtUniProtAccO16202
TREEFAMTREEFAM_IDTF316378
UniProt_GCRPUniProtAccO16202
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:30WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlys
Allele (30)
StrainWBStrain00031984
WBStrain00031985
WBStrain00004711
WBStrain00004740
RNASeq_FPKM (74)
GO_annotation (14)
Ortholog (20)
ParalogWBGene00003090Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00003091Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00003092Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003093Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003094Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003095Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003097Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00003098Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003099Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionlys-7 encodes an enzyme homologous to an antimicrobial lysozyme encoded by the LYS4 gene of the protozoan parasite Entamoeba histolytica; LYS-7 functions in the innate immune response as an antimicrobial enzyme that, by homology, hydrolyzes the 1,4-beta-linkages between N-acetyl-D-glucosamine and N-acetylmuramic acid in peptidoglycan heteropolymers of prokaryotic cell walls; loss of lys-7 activity results in enhanced susceptibility to P. aeruginosa PA14, renders worms susceptible to Cryptococcus neoformans killing, but enhances tolerance to the enteric bacteria Salmonella typhimurium; lys-7 expression is significantly upregulated in response to infection with the Gram-negative bacterium Serratia marcescens; constitutive expression of lys-7 mRNA is detected in the intestine and the intestinal valve cells.Paper_evidenceWBPaper00004651
WBPaper00005382
WBPaper00005569
WBPaper00005654
WBPaper00041211
WBPaper00038223
WBPaper00032276
Curator_confirmedWBPerson1843
Date_last_updated19 Feb 2014 00:00:00
Automated_descriptionInvolved in defense response to other organism. Expressed in head neurons; intestine; and rectal gland cell.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC02A12.4
Corresponding_transcriptC02A12.4.1
Other_sequence (84)
Associated_featureWBsf019148
WBsf019149
WBsf652532
WBsf233493
WBsf233494
Experimental_infoRNAi_result (21)
Expr_patternExpr1973
Expr4716
Expr10716
Expr1018008
Expr1143497
Expr2013318
Expr2031549
Drives_constructWBCnstr00009965
WBCnstr00012193
WBCnstr00015892
WBCnstr00017492
WBCnstr00036232
WBCnstr00041439
Construct_productWBCnstr00009965
WBCnstr00012193
WBCnstr00036232
Microarray_results (18)
Expression_cluster (437)
InteractionWBInteraction000005564
WBInteraction000005565
WBInteraction000105907
WBInteraction000145348
WBInteraction000151423
WBInteraction000159991
WBInteraction000184365
WBInteraction000186318
WBInteraction000187293
WBInteraction000193369
WBInteraction000194304
WBInteraction000195359
WBInteraction000200763
WBInteraction000203717
WBInteraction000203828
WBInteraction000204103
WBInteraction000205374
WBInteraction000207066
WBInteraction000207119
WBInteraction000208394
WBInteraction000211435
WBInteraction000211664
WBInteraction000217313
WBInteraction000219456
WBInteraction000219558
WBInteraction000222095
WBInteraction000225288
WBInteraction000226813
WBInteraction000229187
WBInteraction000237696
WBInteraction000239473
WBInteraction000239772
WBInteraction000240866
WBInteraction000242635
WBInteraction000249632
WBInteraction000251875
WBInteraction000254230
WBInteraction000256366
WBInteraction000260869
WBInteraction000262486
WBInteraction000262622
WBInteraction000270490
WBInteraction000270769
WBInteraction000270854
WBInteraction000271329
WBInteraction000273405
WBInteraction000274594
WBInteraction000275576
WBInteraction000275779
WBInteraction000278248
WBInteraction000281999
WBInteraction000282917
WBInteraction000284530
WBInteraction000284795
WBInteraction000286364
WBInteraction000288522
WBInteraction000289953
WBInteraction000290537
WBInteraction000290824
WBInteraction000292608
WBInteraction000293875
WBInteraction000295754
WBInteraction000296100
WBInteraction000296676
WBInteraction000296679
WBInteraction000302162
WBInteraction000302987
WBInteraction000304007
WBInteraction000305319
WBInteraction000306392
WBInteraction000308946
WBInteraction000310081
WBInteraction000314993
WBInteraction000315384
WBInteraction000315710
WBInteraction000317458
WBInteraction000317545
WBInteraction000317829
WBInteraction000318424
WBInteraction000318634
WBInteraction000318803
WBInteraction000319638
WBInteraction000320216
WBInteraction000324255
WBInteraction000326480
WBInteraction000327536
WBInteraction000331526
WBInteraction000331915
WBInteraction000334422
WBInteraction000335029
WBInteraction000337077
WBInteraction000338181
WBInteraction000338401
WBInteraction000339419
WBInteraction000341568
WBInteraction000343649
WBInteraction000347110
WBInteraction000347128
WBInteraction000347879
WBInteraction000348329
WBInteraction000351431
WBInteraction000351982
WBInteraction000352734
WBInteraction000353565
WBInteraction000354324
WBInteraction000354564
WBInteraction000355098
WBInteraction000356300
WBInteraction000358585
WBInteraction000362840
WBInteraction000365631
WBInteraction000366821
WBInteraction000370586
WBInteraction000372114
WBInteraction000372367
WBInteraction000375833
WBInteraction000378425
WBInteraction000378450
WBInteraction000379974
WBInteraction000381637
WBInteraction000383271
WBInteraction000385372
WBInteraction000385585
WBInteraction000386901
WBInteraction000387474
WBInteraction000391305
WBInteraction000391940
WBInteraction000393209
WBInteraction000394099
WBInteraction000395226
WBInteraction000396464
WBInteraction000397366
WBInteraction000397374
WBInteraction000397586
WBInteraction000398461
WBInteraction000399726
WBInteraction000403239
WBInteraction000404269
WBInteraction000406732
WBInteraction000407555
WBInteraction000408704
WBInteraction000409989
WBInteraction000418164
WBInteraction000423864
WBInteraction000424012
WBInteraction000425315
WBInteraction000426936
WBInteraction000427927
WBInteraction000428078
WBInteraction000428550
WBInteraction000430469
WBInteraction000431671
WBInteraction000434488
WBInteraction000437725
WBInteraction000438929
WBInteraction000439467
WBInteraction000439489
WBInteraction000439606
WBInteraction000443413
WBInteraction000444632
WBInteraction000447775
WBInteraction000453714
WBInteraction000458005
WBInteraction000458696
WBInteraction000503060
WBInteraction000504394
WBInteraction000504497
WBInteraction000504533
WBInteraction000504902
WBInteraction000504999
WBInteraction000505017
WBInteraction000505169
WBInteraction000517585
WBInteraction000517586
WBInteraction000517593
WBInteraction000518643
WBInteraction000518742
WBInteraction000518793
WBInteraction000518794
WBInteraction000520218
WBInteraction000520966
WBInteraction000523976
WBInteraction000536101
WBInteraction000542657
WBInteraction000544058
WBInteraction000544059
WBInteraction000544060
WBInteraction000544061
WBInteraction000544062
WBInteraction000544063
WBInteraction000544064
WBInteraction000544073
WBInteraction000544078
WBInteraction000544786
WBInteraction000552022
WBInteraction000557717
WBInteraction000560882
WBInteraction000561517
WBInteraction000568563
WBInteraction000571252
WBProcessWBbiopr:00000008
WBbiopr:00000039
Map_infoMapVPosition-10.8998Error0.024633
PositivePositive_cloneC02A12Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4881
4924
5423
Pos_neg_data10776
Pseudo_map_position
Reference (65)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene