WormBase Tree Display for Gene: WBGene00001795

WBGene00001795 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: C05C12
  Identity: Version: 1
    Name: CGC_name: gtl-1 Person_evidence: WBPerson51
      Sequence_name: C05C12.3
      Molecular_name: C05C12.3
        C05C12.3.1
        CE33754
      Other_name: tag-33 CGC_data_submission
        CELE_C05C12.3 Accession_evidence: NDB BX284604
      Public_name: gtl-1
    DB_info: Database: AceView gene 4M14
        WormQTL gene WBGene00001795
        WormFlux gene WBGene00001795
        NDB locus_tag CELE_C05C12.3
        Panther gene CAEEL|WormBase=WBGene00001795|UniProtKB=G5ECM4
          family PTHR13800
        NCBI gene 178031
        RefSeq protein NM_069710.6
        TrEMBL UniProtAcc G5ECM4
        UniProt_GCRP UniProtAcc G5ECM4
        OMIM gene 603576
            605692
            608961
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:25 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gtl
    Allele: WBVar02058948
      WBVar01500079
      WBVar01498996
      WBVar01609470
      WBVar01499925
      WBVar02134673
      WBVar01857929
      WBVar01499585
      WBVar00249398
      WBVar01499586
      WBVar00091672
      WBVar01966972
      WBVar01966973
      WBVar01818854
      WBVar00435563
      WBVar00435564
      WBVar00435565
      WBVar00435566
      WBVar00435567
      WBVar00435568
      WBVar00435569
      WBVar00435570
      WBVar00191968
      WBVar00191969
      WBVar00435571
      WBVar00435572
      WBVar00191970
      WBVar00435573
      WBVar00191971
      WBVar00435574
      WBVar00191972
      WBVar00435575
      WBVar00191973
      WBVar00435576
      WBVar00435577
      WBVar00435578
      WBVar00435579
      WBVar00435580
      WBVar00435581
      WBVar00435582
      WBVar00435583
      WBVar00435584
      WBVar00296456
      WBVar00296457
      WBVar00296458
      WBVar00942122
      WBVar02037166
      WBVar00942123
      WBVar00942124
      WBVar00942125
      WBVar00942126
      WBVar00942127
      WBVar00942128
      WBVar00942129
      WBVar00942130
      WBVar00942131
      WBVar01688137
      WBVar00942132
      WBVar00942133
      WBVar01688138
      WBVar00942134
      WBVar00942135
      WBVar00942136
      WBVar00942137
      WBVar00249271
      WBVar00942138
      WBVar00942139
      WBVar00942140
      WBVar00942141
      WBVar00942142
      WBVar00942143
      WBVar00942144
      WBVar00942145
      WBVar00942146
      WBVar00942147
      WBVar00942148
      WBVar00942149
      WBVar00942150
      WBVar00942151
      WBVar00942152
      WBVar00942153
      WBVar00942154
      WBVar01795540
      WBVar00942155
      WBVar00266428
      WBVar00942156
      WBVar00942157
      WBVar00942158
      WBVar01482376
      WBVar00942159
      WBVar00942160
      WBVar00942161
      WBVar00942162
      WBVar00942163
      WBVar00942164
      WBVar00942165
      WBVar00942166
      WBVar00942167
      WBVar00942168
      WBVar00942169
      WBVar00942170
      WBVar00252446
      WBVar00942171
      WBVar00942172
      WBVar00942173
      WBVar00942174
      WBVar01454187
      WBVar00942175
      WBVar00942176
      WBVar00942177
      WBVar02068734
      WBVar00942178
      WBVar01500245
      WBVar00942179
      WBVar00942180
      WBVar01846962
      WBVar00942181
      WBVar00942182
    Strain: WBStrain00003262
      WBStrain00035612
    RNASeq_FPKM (74)
    GO_annotation: 00012064
      00012065
      00012066
      00012067
      00012068
      00012069
    Ortholog (46)
    Paralog: WBGene00001651 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00001796 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00000425 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00004149 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00008731 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020972 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00021404 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00021408 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: gtl-1 encodes a TRPM subfamily member of the TRP channel family that affects the periodicity of the defecation cycle in combination with gon-2; expression includes the intestine. Paper_evidence: WBPaper00005092
            WBPaper00011328
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable monoatomic cation channel activity. Involved in defecation. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis-parkinsonism/dementia complex 1; cataract; and congenital stationary night blindness 1C. Is an ortholog of human TRPM1 (transient receptor potential cation channel subfamily M member 1); TRPM3 (transient receptor potential cation channel subfamily M member 3); and TRPM7 (transient receptor potential cation channel subfamily M member 7). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0110867 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:7146)
      DOID:0050534 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:7146)
      DOID:0111246 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:17994)
      DOID:83 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:17992)
  Molecular_info: Corresponding_CDS: C05C12.3
    Corresponding_CDS_history: C05C12.3:wp99
    Corresponding_transcript: C05C12.3.1
    Other_sequence: FK807706.1
      MHC01321_1
      MH01590
      Dviv_isotig25122
      FM207828.1
    Associated_feature: WBsf668304
      WBsf1018190
      WBsf230849
  Experimental_info: RNAi_result: WBRNAi00010181 Inferred_automatically: RNAi_primary
      WBRNAi00039701 Inferred_automatically: RNAi_primary
      WBRNAi00001394 Inferred_automatically: RNAi_primary
      WBRNAi00001519 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram1622
      Expr3713
      Expr5160
      Expr8230
      Expr8232
      Expr1017897
      Expr1031057
      Expr1143801
      Expr2012342
      Expr2030579
    Drives_construct: WBCnstr00003737
      WBCnstr00007204
      WBCnstr00007207
      WBCnstr00007208
      WBCnstr00007209
      WBCnstr00011622
      WBCnstr00013197
      WBCnstr00021190
      WBCnstr00036678
    Construct_product: WBCnstr00011622
      WBCnstr00013197
      WBCnstr00036678
    Microarray_results (18)
    Expression_cluster (177)
    Interaction (18)
  Map_info: Map: IV Position: 4.92955 Error: 0.001473
    Positive: Positive_clone: C05C12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4386
        4526
    Pseudo_map_position
  Reference (29)
  Remark: Sequence connection from Kwan CSM, Ragnauth CD and Baylis HA [021008 ck1]
    Gene name created from parsing 'genotype' field from CGC strain information CGC_data_submission
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene