WormBase Tree Display for Gene: WBGene00004149
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| WBGene00004149 | SMap | S_parent | Sequence | T16A1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | trpl-5 | Person_evidence | WBPerson260 | |||||
| Sequence_name | T16A1.7 | ||||||||
| Molecular_name | T16A1.7 | ||||||||
| T16A1.7.1 | |||||||||
| CE44917 | |||||||||
| Other_name | pqn-66 | Person_evidence | WBPerson625 | ||||||
| CELE_T16A1.7 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | trpl-5 | ||||||||
| DB_info | Database | AceView | gene | 2C370 | |||||
| WormQTL | gene | WBGene00004149 | |||||||
| WormFlux | gene | WBGene00004149 | |||||||
| NDB | locus_tag | CELE_T16A1.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004149|UniProtKB=P91448 | |||||||
| family | PTHR13800 | ||||||||
| NCBI | gene | 188546 | |||||||
| RefSeq | protein | NM_061776.5 | |||||||
| TREEFAM | TREEFAM_ID | TF315286 | |||||||
| TrEMBL | UniProtAcc | P91448 | |||||||
| UniProt_GCRP | UniProtAcc | P91448 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 11 Apr 2012 13:48:21 | WBPerson2970 | Name_change | CGC_name | trpl-5 | ||||
| Other_name | pqn-66 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | trpl | ||||||||
| Allele (130) | |||||||||
| Strain | WBStrain00032049 | ||||||||
| WBStrain00032053 | |||||||||
| WBStrain00036239 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00051079 | ||||||||
| 00051080 | |||||||||
| 00051081 | |||||||||
| 00051082 | |||||||||
| Ortholog (15) | |||||||||
| Paralog | WBGene00020972 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00021408 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00021404 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00000425 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001651 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001795 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001796 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008731 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic cation transmembrane transport. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T16A1.7 | |||||||
| Corresponding_CDS_history | T16A1.7:wp90 | ||||||||
| T16A1.7:wp185 | |||||||||
| T16A1.7:wp214 | |||||||||
| Corresponding_transcript | T16A1.7.1 | ||||||||
| Other_sequence | GP00855 | ||||||||
| GPC00387_1 | |||||||||
| Associated_feature | WBsf665236 | ||||||||
| WBsf986873 | |||||||||
| WBsf986874 | |||||||||
| WBsf222742 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00018755 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00053398 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027450 | ||||||||
| Expr1156975 | |||||||||
| Expr2017505 | |||||||||
| Expr2035644 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (114) | |||||||||
| Interaction | WBInteraction000324516 | ||||||||
| WBInteraction000333099 | |||||||||
| WBInteraction000340304 | |||||||||
| WBInteraction000401266 | |||||||||
| WBInteraction000401267 | |||||||||
| WBInteraction000469409 | |||||||||
| Map_info | Map | II | Position | -13.8809 | Error | 0.003461 | |||
| Positive | Positive_clone | T16A1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5209 | |||||||
| 4533 | |||||||||
| 5452 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027280 | ||||||||
| WBPaper00043908 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
