WormBase Tree Display for Gene: WBGene00000425
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| WBGene00000425 | SMap | S_parent | Sequence | ZK512 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ced-11 | Person_evidence | WBPerson261 | |||||
| Sequence_name | ZK512.3 | ||||||||
| Molecular_name | ZK512.3 | ||||||||
| ZK512.3.1 | |||||||||
| CE00409 | |||||||||
| Other_name | CELE_ZK512.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | ced-11 | ||||||||
| DB_info | Database | AceView | gene | 3K213 | |||||
| WormQTL | gene | WBGene00000425 | |||||||
| WormFlux | gene | WBGene00000425 | |||||||
| NDB | locus_tag | CELE_ZK512.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000425|UniProtKB=P34641 | |||||||
| family | PTHR13800 | ||||||||
| NCBI | gene | 176288 | |||||||
| RefSeq | protein | NM_066620.6 | |||||||
| SwissProt | UniProtAcc | P34641 | |||||||
| TREEFAM | TREEFAM_ID | TF321453 | |||||||
| UniProt_GCRP | UniProtAcc | P34641 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ced | ||||||||
| Allele (68) | |||||||||
| Legacy_information | [Stanfield G] abnormal programmed cell death corpses | ||||||||
| [C.elegansII] n2744 : abnormal programmed cell death corpses OA3: n2745, n2832, n2833, n2834Cloned: encodes predicted novel protein. [MT] | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00043643 | ||||||||
| 00043644 | |||||||||
| 00043645 | |||||||||
| 00043646 | |||||||||
| 00043647 | |||||||||
| 00043648 | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00001651 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00001795 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001796 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004149 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008731 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020972 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021404 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021408 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | The ced-11 gene encodes a predicted transmembrane ion channel related to the long transient receptor potential channel (LTRPC) subfamily of TRP channels found in Drosophila and mammals; CED-11 functions as a downstream effector in the programmed cell death pathway and may play a role in affecting the morphological changes seen in the nucleus, cytoplasm, and plasma membrane of apoptotic cells. | Paper_evidence | WBPaper00004159 | |||||
| WBPaper00022068 | |||||||||
| WBPaper00022724 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable monoatomic cation channel activity. Involved in apoptotic process. Predicted to be located in membrane. Expressed in apoptotic cell; head; hypodermis; and tail. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK512.3 | |||||||
| Corresponding_transcript | ZK512.3.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf659389 | ||||||||
| WBsf659390 | |||||||||
| WBsf993579 | |||||||||
| WBsf1015548 | |||||||||
| WBsf225522 | |||||||||
| WBsf225523 | |||||||||
| WBsf225524 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00002366 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038317 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059472 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006142 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2040 | ||||||||
| Expr13488 | |||||||||
| Expr1011305 | |||||||||
| Expr1030241 | |||||||||
| Expr1162895 | |||||||||
| Expr2009842 | |||||||||
| Expr2028082 | |||||||||
| Drives_construct | WBCnstr00037551 | ||||||||
| Construct_product | WBCnstr00037551 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (189) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | III | Position | 0.165457 | Error | 0.00081 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | C33D7 | |||||||
| ZK512 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Negative | Negative_clone | C37G7 | |||||||
| ZK507 | |||||||||
| Mapping_data | Multi_point | 2760 | |||||||
| 2761 | |||||||||
| 2762 | |||||||||
| 2763 | |||||||||
| 2764 | |||||||||
| 2765 | |||||||||
| 2766 | |||||||||
| Reference (16) | |||||||||
| Method | Gene |
