WormBase Tree Display for Gene: WBGene00001795
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| WBGene00001795 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C05C12 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | gtl-1 | Person_evidence | WBPerson51 | |||||
| Sequence_name | C05C12.3 | ||||||||
| Molecular_name | C05C12.3 | ||||||||
| C05C12.3.1 | |||||||||
| CE33754 | |||||||||
| Other_name | tag-33 | CGC_data_submission | |||||||
| CELE_C05C12.3 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | gtl-1 | ||||||||
| DB_info | Database | AceView | gene | 4M14 | |||||
| WormQTL | gene | WBGene00001795 | |||||||
| WormFlux | gene | WBGene00001795 | |||||||
| NDB | locus_tag | CELE_C05C12.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001795|UniProtKB=G5ECM4 | |||||||
| family | PTHR13800 | ||||||||
| NCBI | gene | 178031 | |||||||
| RefSeq | protein | NM_069710.6 | |||||||
| TrEMBL | UniProtAcc | G5ECM4 | |||||||
| UniProt_GCRP | UniProtAcc | G5ECM4 | |||||||
| OMIM | gene | 603576 | |||||||
| 605692 | |||||||||
| 608961 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gtl | ||||||||
| Allele (118) | |||||||||
| Strain | WBStrain00003262 | ||||||||
| WBStrain00035612 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00012064 | ||||||||
| 00012065 | |||||||||
| 00012066 | |||||||||
| 00012067 | |||||||||
| 00012068 | |||||||||
| 00012069 | |||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00001651 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001796 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000425 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004149 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008731 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020972 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021404 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021408 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | gtl-1 encodes a TRPM subfamily member of the TRP channel family that affects the periodicity of the defecation cycle in combination with gon-2; expression includes the intestine. | Paper_evidence | WBPaper00005092 | |||||
| WBPaper00011328 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable monoatomic cation channel activity. Involved in defecation. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis-parkinsonism/dementia complex 1; cataract; and congenital stationary night blindness 1C. Is an ortholog of human TRPM1 (transient receptor potential cation channel subfamily M member 1); TRPM3 (transient receptor potential cation channel subfamily M member 3); and TRPM7 (transient receptor potential cation channel subfamily M member 7). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110867 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7146) | ||||
| DOID:0050534 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7146) | ||||||
| DOID:0111246 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17994) | ||||||
| DOID:83 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17992) | ||||||
| Molecular_info | Corresponding_CDS | C05C12.3 | |||||||
| Corresponding_CDS_history | C05C12.3:wp99 | ||||||||
| Corresponding_transcript | C05C12.3.1 | ||||||||
| Other_sequence | FK807706.1 | ||||||||
| MHC01321_1 | |||||||||
| MH01590 | |||||||||
| Dviv_isotig25122 | |||||||||
| FM207828.1 | |||||||||
| Associated_feature | WBsf668304 | ||||||||
| WBsf1018190 | |||||||||
| WBsf230849 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00010181 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00039701 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001394 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001519 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1622 | ||||||||
| Expr3713 | |||||||||
| Expr5160 | |||||||||
| Expr8230 | |||||||||
| Expr8232 | |||||||||
| Expr1017897 | |||||||||
| Expr1031057 | |||||||||
| Expr1143801 | |||||||||
| Expr2012342 | |||||||||
| Expr2030579 | |||||||||
| Drives_construct | WBCnstr00003737 | ||||||||
| WBCnstr00007204 | |||||||||
| WBCnstr00007207 | |||||||||
| WBCnstr00007208 | |||||||||
| WBCnstr00007209 | |||||||||
| WBCnstr00011622 | |||||||||
| WBCnstr00013197 | |||||||||
| WBCnstr00021190 | |||||||||
| WBCnstr00036678 | |||||||||
| Construct_product | WBCnstr00011622 | ||||||||
| WBCnstr00013197 | |||||||||
| WBCnstr00036678 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (177) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | IV | Position | 4.92955 | Error | 0.001473 | |||
| Positive | Positive_clone | C05C12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4386 | |||||||
| 4526 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (29) | |||||||||
| Remark | Sequence connection from Kwan CSM, Ragnauth CD and Baylis HA [021008 ck1] | ||||||||
| Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
