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WormBase Tree Display for Gene: WBGene00000425

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Name Class

WBGene00000425SMapS_parentSequenceZK512
IdentityVersion1
NameCGC_nameced-11Person_evidenceWBPerson261
Sequence_nameZK512.3
Molecular_nameZK512.3
ZK512.3.1
CE00409
Other_nameCELE_ZK512.3Accession_evidenceNDBBX284603
Public_nameced-11
DB_infoDatabaseAceViewgene3K213
WormQTLgeneWBGene00000425
WormFluxgeneWBGene00000425
NDBlocus_tagCELE_ZK512.3
PanthergeneCAEEL|WormBase=WBGene00000425|UniProtKB=P34641
familyPTHR13800
NCBIgene176288
RefSeqproteinNM_066620.6
SwissProtUniProtAccP34641
TREEFAMTREEFAM_IDTF321453
UniProt_GCRPUniProtAccP34641
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classced
Allele (68)
Legacy_information[Stanfield G] abnormal programmed cell death corpses
[C.elegansII] n2744 : abnormal programmed cell death corpses OA3: n2745, n2832, n2833, n2834Cloned: encodes predicted novel protein. [MT]
RNASeq_FPKM (74)
GO_annotation00043643
00043644
00043645
00043646
00043647
00043648
OrthologWBGene00055164Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00029124Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00159603Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00127690Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00208944Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00227742Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g5798Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5660Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2462Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g20126Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3345Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g17639Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16106Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1805Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g6403Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g9093Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00096.g4219Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-ced-11Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold611.g5854Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01713.g22677Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_07486Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_009359Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04889Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g20340Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30259820Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8550Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00207053Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00217554Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00245936Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00278184Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00291331Trichuris murisFrom_analysisWormBase-Compara
WBGene00291719Trichuris murisFrom_analysisWormBase-Compara
WBGene00291720Trichuris murisFrom_analysisWormBase-Compara
WBGene00296752Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00001651Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001795Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001796Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004149Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008731Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020972Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021404Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021408Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionThe ced-11 gene encodes a predicted transmembrane ion channel related to the long transient receptor potential channel (LTRPC) subfamily of TRP channels found in Drosophila and mammals; CED-11 functions as a downstream effector in the programmed cell death pathway and may play a role in affecting the morphological changes seen in the nucleus, cytoplasm, and plasma membrane of apoptotic cells.Paper_evidenceWBPaper00004159
WBPaper00022068
WBPaper00022724
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable monoatomic cation channel activity. Involved in apoptotic process. Predicted to be located in membrane. Expressed in apoptotic cell; head; hypodermis; and tail.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK512.3
Corresponding_transcriptZK512.3.1
Other_sequence (14)
Associated_featureWBsf659389
WBsf659390
WBsf993579
WBsf1015548
WBsf225522
WBsf225523
WBsf225524
Experimental_infoRNAi_resultWBRNAi00002366Inferred_automaticallyRNAi_primary
WBRNAi00038317Inferred_automaticallyRNAi_primary
WBRNAi00059472Inferred_automaticallyRNAi_primary
WBRNAi00006142Inferred_automaticallyRNAi_primary
Expr_patternExpr2040
Expr13488
Expr1011305
Expr1030241
Expr1162895
Expr2009842
Expr2028082
Drives_constructWBCnstr00037551
Construct_productWBCnstr00037551
Microarray_results (21)
Expression_cluster (189)
Interaction (11)
Map_infoMapIIIPosition0.165457Error0.00081
Well_ordered
PositivePositive_cloneC33D7
ZK512Inferred_automaticallyFrom sequence, transcript, pseudogene data
NegativeNegative_cloneC37G7
ZK507
Mapping_dataMulti_point2760
2761
2762
2763
2764
2765
2766
Reference (16)
MethodGene