WormBase Tree Display for Gene: WBGene00021404

WBGene00021404 SMap: S_parent: Sequence: Y38C1AB
  Identity: Version: 2
    Name: CGC_name: trpl-3 Person_evidence: WBPerson260
      Sequence_name: Y38C1AB.2
      Molecular_name: Y38C1AB.2
        Y38C1AB.2.1
        CE51291
      Other_name: CELE_Y38C1AB.2 Accession_evidence: NDB BX284604
      Public_name: trpl-3
    DB_info: Database: AceView gene 4A779
        WormQTL gene WBGene00021404
        WormFlux gene WBGene00021404
        NDB locus_tag CELE_Y38C1AB.2
        Panther gene CAEEL|WormBase=WBGene00021404|UniProtKB=G5EE29
          family PTHR13800
        NCBI gene 176820
        RefSeq protein NM_001322763.1
        TREEFAM TREEFAM_ID TF315286
        TrEMBL UniProtAcc G5EE29
        UniProt_GCRP UniProtAcc G5EE29
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 11 Apr 2012 13:49:30 WBPerson2970 Name_change: CGC_name: trpl-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: trpl
    Allele (23)
    RNASeq_FPKM (74)
    GO_annotation: 00015317
      00015318
      00015319
      00015320
      00125765
      00125766
      00125767
      00125768
    Ortholog (15)
    Paralog: WBGene00004149 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00020972 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00021408 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00000425 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00001651 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00001795 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00001796 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00008731 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic cation transmembrane transport. Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y38C1AB.2
    Corresponding_CDS_history: Y38C1AB.2:wp252
    Corresponding_transcript: Y38C1AB.2.1
    Associated_feature: WBsf995029
      WBsf1016463
  Experimental_info: RNAi_result: WBRNAi00055994 Inferred_automatically: RNAi_primary
      WBRNAi00055995 Inferred_automatically: RNAi_primary
      WBRNAi00036832 Inferred_automatically: RNAi_primary
      WBRNAi00018050 Inferred_automatically: RNAi_primary
      WBRNAi00020258 Inferred_automatically: RNAi_primary
      WBRNAi00020253 Inferred_automatically: RNAi_primary
      WBRNAi00018049 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019114
      Expr1159511
    Drives_construct: WBCnstr00024558
    Construct_product: WBCnstr00024558
    Expression_cluster (45)
  Map_info: Map: IV Position: -27.2229
    Positive: Positive_clone: Y38C1AB Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene