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WormBase Tree Display for CDS: Y38C1AB.2

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Name Class

Y38C1AB.2EvidenceCurator_confirmedWBPerson4025
Inferred_automaticallymake_isoforms.pl
SMapS_parentSequenceY38C1AB
StructureSource_exons (12)
DB_infoDatabaseTrEMBLUniProtAccG5EE29
UniProtUniProtAccG5EE29
UniProt_GCRPUniProtAccG5EE29
AlphaFoldentryG5EE29
NCBI_proteinGI_numberGI:1003482384
TREEFAMTREEFAM_IDTF315286
Protein_idCHROMOSOME_IVCCD682542
DB_remarkTRPL-3 protein; contains similarity to Pfam domain PF00520 (Ion transport protein); contains similarity to Interpro domain IPR005821 (Ion transport domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis elegans
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00021404
Corresponding_transcriptY38C1AB.2.1
Corresponding_proteinCE51291
Corresponding_PCR_product (13)
Corresponding_oligo_set18544000
18557961
Matching_cDNAFN899844Inferred_automaticallytranscript_builder.pl
RNAi_resultWBRNAi00055994
WBRNAi00055995
WBRNAi00036832
WBRNAi00018050
WBRNAi00020258
WBRNAi00020253
WBRNAi00018049
RNASeq_FPKM (74)
Last_reviewed11 Jan 2016 09:48:32WBPerson4025
Remark[160111 gw3] Changed the seventh exon based on the RNASeq splice data.Curator_confirmedWBPerson4025
From_analysisRNASeq
Methodcurated