WormBase Tree Display for Gene: WBGene00021404
expand all nodes | collapse all nodes | view schema
WBGene00021404 | SMap | S_parent | Sequence | Y38C1AB | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | trpl-3 | Person_evidence | WBPerson260 | |||||
Sequence_name | Y38C1AB.2 | ||||||||
Molecular_name | Y38C1AB.2 | ||||||||
Y38C1AB.2.1 | |||||||||
CE51291 | |||||||||
Other_name | CELE_Y38C1AB.2 | Accession_evidence | NDB | BX284604 | |||||
Public_name | trpl-3 | ||||||||
DB_info | Database | AceView | gene | 4A779 | |||||
WormQTL | gene | WBGene00021404 | |||||||
WormFlux | gene | WBGene00021404 | |||||||
NDB | locus_tag | CELE_Y38C1AB.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00021404|UniProtKB=G5EE29 | |||||||
family | PTHR13800 | ||||||||
NCBI | gene | 176820 | |||||||
RefSeq | protein | NM_001322763.1 | |||||||
TREEFAM | TREEFAM_ID | TF315286 | |||||||
TrEMBL | UniProtAcc | G5EE29 | |||||||
UniProt_GCRP | UniProtAcc | G5EE29 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 11 Apr 2012 13:49:30 | WBPerson2970 | Name_change | CGC_name | trpl-3 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | trpl | ||||||||
Allele (23) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00015317 | ||||||||
00015318 | |||||||||
00015319 | |||||||||
00015320 | |||||||||
00125765 | |||||||||
00125766 | |||||||||
00125767 | |||||||||
00125768 | |||||||||
Ortholog (15) | |||||||||
Paralog | WBGene00004149 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WormBase-Compara | |||||||||
WBGene00020972 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00021408 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
WBGene00000425 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00001651 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00001795 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00001796 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00008731 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic cation transmembrane transport. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y38C1AB.2 | |||||||
Corresponding_CDS_history | Y38C1AB.2:wp252 | ||||||||
Corresponding_transcript | Y38C1AB.2.1 | ||||||||
Associated_feature | WBsf995029 | ||||||||
WBsf1016463 | |||||||||
Experimental_info (5) | |||||||||
Map_info | Map | IV | Position | -27.2229 | |||||
Positive | Positive_clone | Y38C1AB | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |