WormBase Tree Display for Gene: WBGene00004149
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WBGene00004149 | SMap | S_parent | Sequence | T16A1 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | trpl | ||||||
Allele (130) | |||||||
Strain | WBStrain00032049 | ||||||
WBStrain00032053 | |||||||
WBStrain00036239 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00051079 | ||||||
00051080 | |||||||
00051081 | |||||||
00051082 | |||||||
Ortholog (15) | |||||||
Paralog | WBGene00020972 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WormBase-Compara | |||||||
WBGene00021408 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00021404 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00000425 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00001651 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00001795 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00001796 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00008731 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||
WBPaper00012788 | |||||||
WBPaper00012830 | |||||||
WBPaper00012882 | |||||||
WBPaper00012897 | |||||||
WBPaper00013003 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic cation transmembrane transport. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T16A1.7 | |||||
Corresponding_CDS_history | T16A1.7:wp90 | ||||||
T16A1.7:wp185 | |||||||
T16A1.7:wp214 | |||||||
Corresponding_transcript | T16A1.7.1 | ||||||
Other_sequence | GP00855 | ||||||
GPC00387_1 | |||||||
Associated_feature | WBsf665236 | ||||||
WBsf986873 | |||||||
WBsf986874 | |||||||
WBsf222742 | |||||||
Experimental_info | RNAi_result | WBRNAi00018755 | Inferred_automatically | RNAi_primary | |||
WBRNAi00053398 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1027450 | ||||||
Expr1156975 | |||||||
Expr2017505 | |||||||
Expr2035644 | |||||||
Microarray_results (18) | |||||||
Expression_cluster (114) | |||||||
Interaction | WBInteraction000324516 | ||||||
WBInteraction000333099 | |||||||
WBInteraction000340304 | |||||||
WBInteraction000401266 | |||||||
WBInteraction000401267 | |||||||
WBInteraction000469409 | |||||||
Map_info | Map | II | Position | -13.8809 | Error | 0.003461 | |
Positive | Positive_clone | T16A1 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 5209 | |||||
4533 | |||||||
5452 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00027280 | ||||||
WBPaper00043908 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |