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WormBase Tree Display for Gene: WBGene00004149

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Name Class

WBGene00004149SMapS_parentSequenceT16A1
IdentityVersion2
NameCGC_nametrpl-5Person_evidenceWBPerson260
Sequence_nameT16A1.7
Molecular_nameT16A1.7
T16A1.7.1
CE44917
Other_namepqn-66Person_evidenceWBPerson625
CELE_T16A1.7Accession_evidenceNDBBX284602
Public_nametrpl-5
DB_infoDatabaseAceViewgene2C370
WormQTLgeneWBGene00004149
WormFluxgeneWBGene00004149
NDBlocus_tagCELE_T16A1.7
PanthergeneCAEEL|WormBase=WBGene00004149|UniProtKB=P91448
familyPTHR13800
NCBIgene188546
RefSeqproteinNM_061776.5
TREEFAMTREEFAM_IDTF315286
TrEMBLUniProtAccP91448
UniProt_GCRPUniProtAccP91448
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
211 Apr 2012 13:48:21WBPerson2970Name_changeCGC_nametrpl-5
Other_namepqn-66
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtrpl
Allele (130)
StrainWBStrain00032049
WBStrain00032053
WBStrain00036239
RNASeq_FPKM (74)
GO_annotation00051079
00051080
00051081
00051082
Ortholog (15)
ParalogWBGene00020972Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00021408Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00021404Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000425Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001651Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001795Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001796Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00008731Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionThe protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).Paper_evidenceWBPaper00005068
WBPaper00012788
WBPaper00012830
WBPaper00012882
WBPaper00012897
WBPaper00013003
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic cation transmembrane transport. Predicted to be located in membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST16A1.7
Corresponding_CDS_historyT16A1.7:wp90
T16A1.7:wp185
T16A1.7:wp214
Corresponding_transcriptT16A1.7.1
Other_sequenceGP00855
GPC00387_1
Associated_featureWBsf665236
WBsf986873
WBsf986874
WBsf222742
Experimental_infoRNAi_resultWBRNAi00018755Inferred_automaticallyRNAi_primary
WBRNAi00053398Inferred_automaticallyRNAi_primary
Expr_patternExpr1027450
Expr1156975
Expr2017505
Expr2035644
Microarray_results (18)
Expression_clusterWBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038168:lin-35_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
WBPaper00044316:CH3HgCl_2.0uM_upregulated
WBPaper00045401:N.parisii_8h_upregulated
WBPaper00045401:N.parisii_16h_upregulated
WBPaper00045774:clk-1_upregulated
WBPaper00049018:swsn-2.2(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00051137:N.parisii-virus_upregulated_N2
WBPaper00051137:Orsay-virus_upregulated_N2
WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
WBPaper00051371:Orsay-virus-infection_upregulated_rde-1(ne219)
WBPaper00053020:OrsayVirus-infection_upregulated
WBPaper00053020:OrsayVirus-infection_upregulated_microarray
WBPaper00053402:his-3(RNAi)_upregulated
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053909:N2_vs_CB4856_downregulated
WBPaper00055137:S.maltophilia_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
WBPaper00058711:paraquat_downregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058711:wdr-5(ok1417)_downregulated
WBPaper00058955:heatshock_upregulated_CE
WBPaper00060014:set-2(zr2012)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061319:pnp-1(jy90)_upregulated
WBPaper00061319:pnp-1(jy121)_upregulated
WBPaper00061340:B
WBPaper00061341:28C_48h_upregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061466:nath-10(icb99)_upregulated
WBPaper00061527:C17H1.6-C17H1.13
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00061995:mter-4(syb3662syb3403)_upregulated
WBPaper00062056:lin-15B(n744)_upregulated
WBPaper00062056:lin-15B(we23)_upregulated
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062056:lin-37(n758)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062354:H.zoospora_12h_regulated
WBPaper00062587:lsl-1(ljm1)_downregulated
WBPaper00062587:lsl-1(tm4769)_downregulated
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
WBPaper00064532:pals-22(jy3)_upregulated
WBPaper00064532:pals-25(icb98)_upregulated
WBPaper00065005:sams-3(RNAi)_upregulated
WBPaper00065029:cadmium_upregulated
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065086:N2_N.ferruginous_regulated
WBPaper00065086:N2_N.ironsii_regulated
WBPaper00065086:N2_N.parisii_regulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:npr-8(ok1439)_downregulated_Day1_20C
WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00066204:CdCl2_upregulated_mRNA
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4489_group_10
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00030985:Serratia_marcesens_upregulated
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00035227:heat_shock_regulated
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040858:eQTL_regulated_old
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00042574:rde-1(ne219)_OrsayVirus_upregulated
WBPaper00045294:50uM_TBBP_downregulated
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
InteractionWBInteraction000324516
WBInteraction000333099
WBInteraction000340304
WBInteraction000401266
WBInteraction000401267
WBInteraction000469409
Map_infoMapIIPosition-13.8809Error0.003461
PositivePositive_cloneT16A1Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point5209
4533
5452
Pseudo_map_position
ReferenceWBPaper00027280
WBPaper00043908
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene