WormBase Tree Display for Gene: WBGene00001795
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WBGene00001795 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C05C12 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | gtl-1 | Person_evidence | WBPerson51 | |||||
Sequence_name | C05C12.3 | ||||||||
Molecular_name | C05C12.3 | ||||||||
C05C12.3.1 | |||||||||
CE33754 | |||||||||
Other_name | tag-33 | CGC_data_submission | |||||||
CELE_C05C12.3 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | gtl-1 | ||||||||
DB_info | Database | AceView | gene | 4M14 | |||||
WormQTL | gene | WBGene00001795 | |||||||
WormFlux | gene | WBGene00001795 | |||||||
NDB | locus_tag | CELE_C05C12.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001795|UniProtKB=G5ECM4 | |||||||
family | PTHR13800 | ||||||||
NCBI | gene | 178031 | |||||||
RefSeq | protein | NM_069710.6 | |||||||
TrEMBL | UniProtAcc | G5ECM4 | |||||||
UniProt_GCRP | UniProtAcc | G5ECM4 | |||||||
OMIM | gene | 603576 | |||||||
605692 | |||||||||
608961 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gtl | ||||||||
Allele | WBVar02058948 | ||||||||
WBVar01500079 | |||||||||
WBVar01498996 | |||||||||
WBVar01609470 | |||||||||
WBVar01499925 | |||||||||
WBVar02134673 | |||||||||
WBVar01857929 | |||||||||
WBVar01499585 | |||||||||
WBVar00249398 | |||||||||
WBVar01499586 | |||||||||
WBVar00091672 | |||||||||
WBVar01966972 | |||||||||
WBVar01966973 | |||||||||
WBVar01818854 | |||||||||
WBVar00435563 | |||||||||
WBVar00435564 | |||||||||
WBVar00435565 | |||||||||
WBVar00435566 | |||||||||
WBVar00435567 | |||||||||
WBVar00435568 | |||||||||
WBVar00435569 | |||||||||
WBVar00435570 | |||||||||
WBVar00191968 | |||||||||
WBVar00191969 | |||||||||
WBVar00435571 | |||||||||
WBVar00435572 | |||||||||
WBVar00191970 | |||||||||
WBVar00435573 | |||||||||
WBVar00191971 | |||||||||
WBVar00435574 | |||||||||
WBVar00191972 | |||||||||
WBVar00435575 | |||||||||
WBVar00191973 | |||||||||
WBVar00435576 | |||||||||
WBVar00435577 | |||||||||
WBVar00435578 | |||||||||
WBVar00435579 | |||||||||
WBVar00435580 | |||||||||
WBVar00435581 | |||||||||
WBVar00435582 | |||||||||
WBVar00435583 | |||||||||
WBVar00435584 | |||||||||
WBVar00296456 | |||||||||
WBVar00296457 | |||||||||
WBVar00296458 | |||||||||
WBVar00942122 | |||||||||
WBVar02037166 | |||||||||
WBVar00942123 | |||||||||
WBVar00942124 | |||||||||
WBVar00942125 | |||||||||
WBVar00942126 | |||||||||
WBVar00942127 | |||||||||
WBVar00942128 | |||||||||
WBVar00942129 | |||||||||
WBVar00942130 | |||||||||
WBVar00942131 | |||||||||
WBVar01688137 | |||||||||
WBVar00942132 | |||||||||
WBVar00942133 | |||||||||
WBVar01688138 | |||||||||
WBVar00942134 | |||||||||
WBVar00942135 | |||||||||
WBVar00942136 | |||||||||
WBVar00942137 | |||||||||
WBVar00249271 | |||||||||
WBVar00942138 | |||||||||
WBVar00942139 | |||||||||
WBVar00942140 | |||||||||
WBVar00942141 | |||||||||
WBVar00942142 | |||||||||
WBVar00942143 | |||||||||
WBVar00942144 | |||||||||
WBVar00942145 | |||||||||
WBVar00942146 | |||||||||
WBVar00942147 | |||||||||
WBVar00942148 | |||||||||
WBVar00942149 | |||||||||
WBVar00942150 | |||||||||
WBVar00942151 | |||||||||
WBVar00942152 | |||||||||
WBVar00942153 | |||||||||
WBVar00942154 | |||||||||
WBVar01795540 | |||||||||
WBVar00942155 | |||||||||
WBVar00266428 | |||||||||
WBVar00942156 | |||||||||
WBVar00942157 | |||||||||
WBVar00942158 | |||||||||
WBVar01482376 | |||||||||
WBVar00942159 | |||||||||
WBVar00942160 | |||||||||
WBVar00942161 | |||||||||
WBVar00942162 | |||||||||
WBVar00942163 | |||||||||
WBVar00942164 | |||||||||
WBVar00942165 | |||||||||
WBVar00942166 | |||||||||
WBVar00942167 | |||||||||
WBVar00942168 | |||||||||
WBVar00942169 | |||||||||
WBVar00942170 | |||||||||
WBVar00252446 | |||||||||
WBVar00942171 | |||||||||
WBVar00942172 | |||||||||
WBVar00942173 | |||||||||
WBVar00942174 | |||||||||
WBVar01454187 | |||||||||
WBVar00942175 | |||||||||
WBVar00942176 | |||||||||
WBVar00942177 | |||||||||
WBVar02068734 | |||||||||
WBVar00942178 | |||||||||
WBVar01500245 | |||||||||
WBVar00942179 | |||||||||
WBVar00942180 | |||||||||
WBVar01846962 | |||||||||
WBVar00942181 | |||||||||
WBVar00942182 | |||||||||
Strain | WBStrain00003262 | ||||||||
WBStrain00035612 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00012064 | ||||||||
00012065 | |||||||||
00012066 | |||||||||
00012067 | |||||||||
00012068 | |||||||||
00012069 | |||||||||
Ortholog (46) | |||||||||
Paralog | WBGene00001651 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00001796 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000425 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00004149 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00008731 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00020972 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00021404 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00021408 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | gtl-1 encodes a TRPM subfamily member of the TRP channel family that affects the periodicity of the defecation cycle in combination with gon-2; expression includes the intestine. | Paper_evidence | WBPaper00005092 | |||||
WBPaper00011328 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable monoatomic cation channel activity. Involved in defecation. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis-parkinsonism/dementia complex 1; cataract; and congenital stationary night blindness 1C. Is an ortholog of human TRPM1 (transient receptor potential cation channel subfamily M member 1); TRPM3 (transient receptor potential cation channel subfamily M member 3); and TRPM7 (transient receptor potential cation channel subfamily M member 7). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0110867 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7146) | ||||
DOID:0050534 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7146) | ||||||
DOID:0111246 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17994) | ||||||
DOID:83 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17992) | ||||||
Molecular_info | Corresponding_CDS | C05C12.3 | |||||||
Corresponding_CDS_history | C05C12.3:wp99 | ||||||||
Corresponding_transcript | C05C12.3.1 | ||||||||
Other_sequence | FK807706.1 | ||||||||
MHC01321_1 | |||||||||
MH01590 | |||||||||
Dviv_isotig25122 | |||||||||
FM207828.1 | |||||||||
Associated_feature | WBsf668304 | ||||||||
WBsf1018190 | |||||||||
WBsf230849 | |||||||||
Experimental_info | RNAi_result | WBRNAi00010181 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00039701 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00001394 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00001519 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (10) | |||||||||
Drives_construct | WBCnstr00003737 | ||||||||
WBCnstr00007204 | |||||||||
WBCnstr00007207 | |||||||||
WBCnstr00007208 | |||||||||
WBCnstr00007209 | |||||||||
WBCnstr00011622 | |||||||||
WBCnstr00013197 | |||||||||
WBCnstr00021190 | |||||||||
WBCnstr00036678 | |||||||||
Construct_product | WBCnstr00011622 | ||||||||
WBCnstr00013197 | |||||||||
WBCnstr00036678 | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (177) | |||||||||
Interaction (18) | |||||||||
Map_info | Map | IV | Position | 4.92955 | Error | 0.001473 | |||
Positive | Positive_clone | C05C12 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4386 | |||||||
4526 | |||||||||
Pseudo_map_position | |||||||||
Reference (29) | |||||||||
Remark | Sequence connection from Kwan CSM, Ragnauth CD and Baylis HA [021008 ck1] | ||||||||
Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |