WormBase Tree Display for Gene: WBGene00002016
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WBGene00002016 | SMap | S_parent | Sequence | Y46H3A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | hsp-16.2 | Person_evidence | WBPerson36 | |||||
Sequence_name | Y46H3A.3 | ||||||||
Molecular_name (6) | |||||||||
Other_name | hsp-16 | ||||||||
hsp16-2 | Paper_evidence | WBPaper00035961 | |||||||
CELE_Y46H3A.3 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | hsp-16.2 | ||||||||
DB_info | Database | AceView | gene | 5C282 | |||||
WormQTL | gene | WBGene00002016 | |||||||
WormFlux | gene | WBGene00002016 | |||||||
NDB | locus_tag | CELE_Y46H3A.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00002016|UniProtKB=P06582 | |||||||
family | PTHR45640 | ||||||||
NCBI | gene | 178659 | |||||||
RefSeq | protein | NM_001392482.1 | |||||||
NM_001307736.3 | |||||||||
SwissProt | UniProtAcc | P06582 | |||||||
TrEMBL | UniProtAcc | V6CLQ2 | |||||||
UniProt_GCRP | UniProtAcc | P06582 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | hsp | ||||||||
Allele (16) | |||||||||
Strain (36) | |||||||||
In_cluster | HSP16B | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00038912 | ||||||||
00038913 | |||||||||
00038914 | |||||||||
00038915 | |||||||||
00038916 | |||||||||
00038917 | |||||||||
00038918 | |||||||||
00038919 | |||||||||
00038920 | |||||||||
00105435 | |||||||||
Ortholog (92) | |||||||||
Paralog | WBGene00002011 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00002012 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00002013 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00002015 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00002024 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00021943 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00002021 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004798 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00008591 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00008592 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00002018 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00002020 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
WBGene00002019 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00014233 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
WBGene00002017 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
WBGene00002023 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00011906 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | hsp-16.2 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins; hsp-16.2 expression, strongest in intestine and pharynx, is induced in response to heat shock or other environmental stresses; HSP-16.2 has been shown to interact with intracellular human beta amyloid peptide, a primary component of the extracellular plaques found in Alzheimer's disease; HSP-16.2 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. | Paper_evidence | WBPaper00001187 | |||||
WBPaper00001497 | |||||||||
WBPaper00002665 | |||||||||
WBPaper00003787 | |||||||||
WBPaper00004424 | |||||||||
WBPaper00005371 | |||||||||
WBPaper00013029 | |||||||||
WBPaper00013239 | |||||||||
WBPaper00013280 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 05 Nov 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable unfolded protein binding activity. Involved in response to heat. Located in cytoplasm. Expressed in several structures, including coelomocyte; enteric muscle; gonad; somatic nervous system; and spermatid. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y46H3A.3a | |||||||
Y46H3A.3b | |||||||||
Corresponding_transcript | Y46H3A.3a.1 | ||||||||
Y46H3A.3b.1 | |||||||||
Other_sequence (86) | |||||||||
Associated_feature | WBsf652481 | ||||||||
WBsf652482 | |||||||||
WBsf919559 | |||||||||
WBsf919560 | |||||||||
WBsf919561 | |||||||||
WBsf919562 | |||||||||
WBsf233356 | |||||||||
WBsf233357 | |||||||||
WBsf233358 | |||||||||
Experimental_info | RNAi_result | WBRNAi00020672 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027604 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00076795 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00063187 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00113926 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00063652 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00056700 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00070128 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00106382 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00113923 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (12) | |||||||||
Drives_construct (233) | |||||||||
Construct_product | WBCnstr00004969 | ||||||||
WBCnstr00010254 | |||||||||
WBCnstr00021901 | |||||||||
WBCnstr00036520 | |||||||||
WBCnstr00042208 | |||||||||
Antibody | WBAntibody00000050 | ||||||||
WBAntibody00001324 | |||||||||
WBAntibody00001797 | |||||||||
WBAntibody00001844 | |||||||||
WBAntibody00001859 | |||||||||
Microarray_results (16) | |||||||||
Expression_cluster (393) | |||||||||
Interaction (315) | |||||||||
WBProcess | WBbiopr:00000050 | ||||||||
Map_info | Map | V | Position | -17.5804 | Error | 0.043798 | |||
Positive | Positive_clone | Y46H3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4418 | |||||||
5335 | |||||||||
Pseudo_map_position | |||||||||
Reference (244) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |