WormBase Tree Display for Gene: WBGene00002017
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| WBGene00002017 | SMap | S_parent | Sequence | T27E4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | hsp-16.11 | Person_evidence | WBPerson36 | |||||
| Sequence_name | T27E4.2 | ||||||||
| Molecular_name | T27E4.2 | ||||||||
| T27E4.2.1 | |||||||||
| CE14249 | |||||||||
| Other_name | hsp-16 | ||||||||
| CELE_T27E4.2 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | hsp-16.11 | ||||||||
| DB_info | Database | AceView | gene | 5J571 | |||||
| WormFlux | gene | WBGene00002017 | |||||||
| NDB | locus_tag | CELE_T27E4.2 | |||||||
| NCBI | gene | 179289 | |||||||
| RefSeq | protein | NM_072956.4 | |||||||
| SwissProt | UniProtAcc | P34696 | |||||||
| UniProt_GCRP | UniProtAcc | P34696 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hsp | ||||||||
| Allele | WBVar01499903 | ||||||||
| WBVar01500129 | |||||||||
| WBVar01499419 | |||||||||
| WBVar01499420 | |||||||||
| WBVar01499056 | |||||||||
| WBVar01499249 | |||||||||
| WBVar00250229 | |||||||||
| WBVar01499316 | |||||||||
| In_cluster | HSP16A | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00105746 | ||||||||
| 00105796 | |||||||||
| 00106137 | |||||||||
| Ortholog (93) | |||||||||
| Paralog (17) | |||||||||
| Structured_description | Concise_description | hsp-16.11 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins, and that is identical to the protein encoded by hsp-16.1; hsp-16.11 expression is induced in response to heat shock or other environmental stresses; HSP-16.11 is likely to function as passive ligand temporarily preventing unfolded proteins from aggregating; HSP-16.11 has been shown to interact with intracellular human beta amyloid peptide, a primary component of the extracellular plaques found in Alzheimer's disease. | Paper_evidence | WBPaper00002665 | |||||
| WBPaper00004424 | |||||||||
| WBPaper00005371 | |||||||||
| WBPaper00013029 | |||||||||
| WBPaper00013239 | |||||||||
| WBPaper00013280 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable unfolded protein binding activity. Involved in endoplasmic reticulum unfolded protein response. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T27E4.2 | |||||||
| Corresponding_transcript | T27E4.2.1 | ||||||||
| Other_sequence (30) | |||||||||
| Associated_feature | WBsf232206 | ||||||||
| WBsf232207 | |||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Expr1024602 | ||||||||
| Expr1157856 | |||||||||
| Expr2012616 | |||||||||
| Expr2030852 | |||||||||
| Drives_construct | WBCnstr00036519 | ||||||||
| Construct_product | WBCnstr00036519 | ||||||||
| Antibody | WBAntibody00001859 | ||||||||
| Microarray_results | SMD_T27E4.2 | ||||||||
| Expression_cluster (208) | |||||||||
| Interaction (24) | |||||||||
| Map_info | Map | V | Position | 1.93302 | Error | 0.00282 | |||
| Positive | Positive_clone | T27E4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (51) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
