WormBase Tree Display for Gene: WBGene00002011
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| WBGene00002011 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C14B9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | hsp-12.2 | Person_evidence | WBPerson36 | |||||
| Sequence_name | C14B9.1 | ||||||||
| Molecular_name | C14B9.1 | ||||||||
| C14B9.1.1 | |||||||||
| CE00072 | |||||||||
| Other_name | CELE_C14B9.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | hsp-12.2 | ||||||||
| DB_info | Database | AceView | gene | 3J229 | |||||
| WormQTL | gene | WBGene00002011 | |||||||
| WormFlux | gene | WBGene00002011 | |||||||
| NDB | locus_tag | CELE_C14B9.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002011|UniProtKB=P34328 | |||||||
| family | PTHR45640 | ||||||||
| NCBI | gene | 176148 | |||||||
| RefSeq | protein | NM_066375.8 | |||||||
| SwissProt | UniProtAcc | P34328 | |||||||
| UniProt_GCRP | UniProtAcc | P34328 | |||||||
| OMIM | gene | 123580 | |||||||
| 123590 | |||||||||
| 602195 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hsp | ||||||||
| Allele (18) | |||||||||
| Legacy_information | small heat shock protein | ||||||||
| Strain | WBStrain00033286 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00041637 | ||||||||
| 00041638 | |||||||||
| 00041639 | |||||||||
| 00041640 | |||||||||
| 00041641 | |||||||||
| 00041642 | |||||||||
| 00041643 | |||||||||
| Ortholog (41) | |||||||||
| Paralog (17) | |||||||||
| Structured_description | Concise_description | hsp-12.2 encodes a small heat-shock protein that forms heterotetramerswith HSP-12.3 and has no chaperone-like activity; structurally, HSP-12.2is mostly a beta-sheet; at least one HSP-12 (which may or may not beHSP-12.2) is ubiquitously expressed in L1 larvae, and later expressed inadult spermatids (and perhaps spermatocytes), and some adult vulvalcells. | Paper_evidence | WBPaper00003194 | |||||
| WBPaper00004387 | |||||||||
| Curator_confirmed | WBPerson1823 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 31 Jan 2007 00:00:00 | ||||||||
| Automated_description | Enables heat shock protein binding activity. Predicted to be involved in protein refolding and response to heat. Located in cytoplasm. Human ortholog(s) of this gene implicated in several diseases, including Charcot-Marie-Tooth disease axonal type 2F; cataract (multiple); and myofibrillar myopathy (multiple). Is an ortholog of human CRYAA (crystallin alpha A); CRYAB (crystallin alpha B); and HSPB6 (heat shock protein family B (small) member 6). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (11) | ||||||||
| Molecular_info | Corresponding_CDS | C14B9.1 | |||||||
| Corresponding_transcript | C14B9.1.1 | ||||||||
| Other_sequence (77) | |||||||||
| Associated_feature | WBsf645389 | ||||||||
| WBsf645390 | |||||||||
| WBsf659231 | |||||||||
| WBsf993251 | |||||||||
| WBsf993252 | |||||||||
| WBsf1015363 | |||||||||
| WBsf225354 | |||||||||
| WBsf225355 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00040502 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010731 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028878 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106377 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005756 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040503 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006681 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005761 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076123 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040501 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr15513 | ||||||||
| Expr1017917 | |||||||||
| Expr1031174 | |||||||||
| Expr1144567 | |||||||||
| Expr2012613 | |||||||||
| Expr2030849 | |||||||||
| Drives_construct | WBCnstr00036524 | ||||||||
| WBCnstr00042204 | |||||||||
| Construct_product | WBCnstr00036524 | ||||||||
| WBCnstr00042204 | |||||||||
| Antibody | WBAntibody00003011 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (196) | |||||||||
| Interaction (68) | |||||||||
| Map_info | Map | III | Position | -0.376106 | Error | 0.000134 | |||
| Positive | Positive_clone | C14B9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Sequence connection from [Kokke BPA, de Jong WW] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
