WormBase Tree Display for Gene: WBGene00000401

WBGene00000401 SMap: S_parent: Sequence: F59C12
  Identity: Version: 1
    Name: CGC_name: cdh-9 Person_evidence: WBPerson698
      Sequence_name: F59C12.1
      Molecular_name: F59C12.1a
        F59C12.1a.1
        CE38081
        F59C12.1b
        CE54265
        F59C12.1b.1
      Other_name: CELE_F59C12.1 Accession_evidence: NDB BX284606
      Public_name: cdh-9
    DB_info: Database: AceView gene XR215
        WormQTL gene WBGene00000401
        WormFlux gene WBGene00000401
        NDB locus_tag CELE_F59C12.1
        Panther gene CAEEL|WormBase=WBGene00000401|UniProtKB=Q21035
          family PTHR24026
        NCBI gene 186608
        RefSeq protein NM_078284.6
            NM_001392909.1
        TrEMBL UniProtAcc A0A7R9SUP0
            Q21035
        UniProt_GCRP UniProtAcc Q21035
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:20 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cdh
    Allele (99)
    Strain: WBStrain00037905
    RNASeq_FPKM (74)
    GO_annotation: 00070078
      00070079
      00070080
      00107335
      00107336
      00107337
    Ortholog: WBGene00063229 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00036312 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00036338 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
      WBGene00144323 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00089626 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00132608 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g3987 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g9816 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g9775 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g16206 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g4642 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g24541 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13814 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g10448 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g13385 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g10941 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00664.g13273 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-cdh-9 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13325 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00001.g67 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_02354 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023191 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g13550 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g21236 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0043900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g20898 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00265223 Strongyloides ratti From_analysis: WormBase-Compara
      FB:FBgn0039294 Drosophila melanogaster From_analysis: Inparanoid
            OrthoInspector
            PhylomeDB
      ZFIN:ZDB-GENE-091015-2 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
      ZFIN:ZDB-GENE-150311-2 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
      ZFIN:ZDB-GENE-091116-32 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
      ZFIN:ZDB-GENE-090313-82 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
      ZFIN:ZDB-GENE-140106-21 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
      HGNC:8655 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
      HGNC:8659 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
      HGNC:8661 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
      HGNC:14257 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
      RGD:620504 Rattus norvegicus From_analysis: EnsEMBL-Compara
            PhylomeDB
      RGD:1306297 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
      RGD:1306348 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
      RGD:1308490 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
      RGD:1303209 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
    Paralog: WBGene00000395 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000396 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000397 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000399 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000402 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00017576 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00019994 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022103 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: cdh-9 encodes a member of the cadherin superfamily of transmembrane glycoproteins that mediate homophilic cell-cell adhesion; as loss of CDH-9 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of CDH-9 in C. elegans development and/or behavior is not yet known. Paper_evidence: WBPaper00004508
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Is an ortholog of several human genes including PCDH1 (protocadherin 1); PCDH7 (protocadherin 7); and PCDH9 (protocadherin 9). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F59C12.1a
      F59C12.1b
    Corresponding_CDS_history: F59C12.1:wp129
      F59C12.1:wp138
    Corresponding_transcript: F59C12.1a.1
      F59C12.1b.1
    Other_sequence: BMC03949_1
      JI481587.1
    Associated_feature (15)
  Experimental_info (7)
  Map_info: Map: X Position: 24.056
    Positive: Positive_clone: F59C12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004508
    WBPaper00011654
    WBPaper00011812
    WBPaper00013424
    WBPaper00027233
    WBPaper00055090
    WBPaper00058555
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene