WormBase Tree Display for Gene: WBGene00000395
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WBGene00000395 | SMap | S_parent | Sequence | ZK112 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name (5) | |||||||||
DB_info | Database | AceView | gene | 3I832 | |||||
WormQTL | gene | WBGene00000395 | |||||||
WormFlux | gene | WBGene00000395 | |||||||
NDB | locus_tag | CELE_ZK112.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000395|UniProtKB=P34616 | |||||||
family | PTHR24028 | ||||||||
NCBI | gene | 176085 | |||||||
RefSeq | protein | NM_066286.6 | |||||||
SwissProt | UniProtAcc | P34616 | |||||||
UniProt_GCRP | UniProtAcc | P34616 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cdh | ||||||||
Allele (171) | |||||||||
Legacy_information | [Pettitt J, Wood WB] Encodes a cadherin-related protein. 10kb transcript detected on Northern blots, in late-stage embryo and L1 larval RNA. lac-Z driven by a 5 kb promoter fragment results in lac-Z expression in seam cells in comma-stage through to 3-fold embryos. A few other as yet unidentified hypodermal cells also stain in the anterior. | ||||||||
Strain | WBStrain00026516 | ||||||||
WBStrain00030884 | |||||||||
WBStrain00030896 | |||||||||
WBStrain00030900 | |||||||||
WBStrain00040717 | |||||||||
WBStrain00028923 | |||||||||
WBStrain00028943 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (22) | |||||||||
Ortholog (23) | |||||||||
Paralog | WBGene00019994 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WormBase-Compara | |||||||||
WBGene00000396 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
WBGene00000402 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00000397 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00000399 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00000401 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00017576 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00022103 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | cdh-3 encodes a member of the cadherin superfamily that affects morphogenesis of tail epithelia and excretory function; expressed predominantly in developing epithelial cells, and also expressed in the AC, excretory cell, various neurons, and vulval cells during different stages of development. | Paper_evidence | WBPaper00002636 | |||||
WBPaper00011717 | |||||||||
WBPaper00017629 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable structural molecule activity. Involved in basement membrane disassembly and nematode male tail tip morphogenesis. Located in basement membrane; cytoplasm; and plasma membrane. Expressed in several structures, including HSN; VC neuron; anchor cell; epithelial cell; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZK112.7 | |||||||
Corresponding_CDS_history | ZK112.7:wp246 | ||||||||
Corresponding_transcript | ZK112.7.1 | ||||||||
Other_sequence | Tcir_isotig12995 | ||||||||
Associated_feature | WBsf667100 | ||||||||
WBsf667101 | |||||||||
WBsf993126 | |||||||||
WBsf993127 | |||||||||
WBsf993128 | |||||||||
WBsf993129 | |||||||||
WBsf1015302 | |||||||||
WBsf1015303 | |||||||||
WBsf1015304 | |||||||||
WBsf227018 | |||||||||
Experimental_info | RNAi_result | WBRNAi00021816 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00059125 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00107682 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00005441 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (16) | |||||||||
Drives_construct | WBCnstr00000052 | ||||||||
WBCnstr00000798 | |||||||||
WBCnstr00001679 | |||||||||
WBCnstr00004655 | |||||||||
WBCnstr00004656 | |||||||||
WBCnstr00004661 | |||||||||
WBCnstr00005449 | |||||||||
WBCnstr00005450 | |||||||||
WBCnstr00005451 | |||||||||
WBCnstr00005454 | |||||||||
WBCnstr00005455 | |||||||||
WBCnstr00005456 | |||||||||
WBCnstr00005457 | |||||||||
WBCnstr00005459 | |||||||||
WBCnstr00006137 | |||||||||
WBCnstr00006139 | |||||||||
WBCnstr00006510 | |||||||||
WBCnstr00006511 | |||||||||
WBCnstr00006669 | |||||||||
WBCnstr00006683 | |||||||||
WBCnstr00006686 | |||||||||
WBCnstr00006854 | |||||||||
WBCnstr00006855 | |||||||||
WBCnstr00010351 | |||||||||
WBCnstr00015711 | |||||||||
WBCnstr00015712 | |||||||||
WBCnstr00015725 | |||||||||
WBCnstr00015726 | |||||||||
WBCnstr00015727 | |||||||||
WBCnstr00015728 | |||||||||
WBCnstr00017241 | |||||||||
WBCnstr00017242 | |||||||||
WBCnstr00017997 | |||||||||
WBCnstr00017998 | |||||||||
WBCnstr00017999 | |||||||||
WBCnstr00018000 | |||||||||
WBCnstr00018001 | |||||||||
WBCnstr00018995 | |||||||||
WBCnstr00018996 | |||||||||
WBCnstr00018998 | |||||||||
WBCnstr00019151 | |||||||||
WBCnstr00019152 | |||||||||
WBCnstr00019197 | |||||||||
WBCnstr00019198 | |||||||||
WBCnstr00019199 | |||||||||
WBCnstr00019200 | |||||||||
WBCnstr00019201 | |||||||||
WBCnstr00019392 | |||||||||
WBCnstr00019394 | |||||||||
WBCnstr00019610 | |||||||||
WBCnstr00019611 | |||||||||
WBCnstr00021182 | |||||||||
WBCnstr00021184 | |||||||||
WBCnstr00021187 | |||||||||
WBCnstr00021448 | |||||||||
WBCnstr00022479 | |||||||||
WBCnstr00022480 | |||||||||
WBCnstr00022481 | |||||||||
WBCnstr00022482 | |||||||||
WBCnstr00022654 | |||||||||
WBCnstr00022868 | |||||||||
WBCnstr00037572 | |||||||||
WBCnstr00038160 | |||||||||
Construct_product | WBCnstr00001679 | ||||||||
WBCnstr00006510 | |||||||||
WBCnstr00006511 | |||||||||
WBCnstr00015725 | |||||||||
WBCnstr00015726 | |||||||||
WBCnstr00015727 | |||||||||
WBCnstr00015730 | |||||||||
WBCnstr00037572 | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (176) | |||||||||
Interaction (48) | |||||||||
Map_info | Map | III | Position | -0.618657 | Error | 0.003852 | |||
Positive | Positive_clone | ZK112 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4191 | |||||||
5266 | |||||||||
Pseudo_map_position | |||||||||
Reference (66) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |