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WormBase Tree Display for Gene: WBGene00000395

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Name Class

WBGene00000395SMapS_parentSequenceZK112
IdentityVersion1
NameCGC_namecdh-3Person_evidenceWBPerson698
Sequence_nameZK112.7
Molecular_nameZK112.7
ZK112.7.1
CE50490
Other_nameCELE_ZK112.7Accession_evidenceNDBBX284603
Public_namecdh-3
DB_infoDatabaseAceViewgene3I832
WormQTLgeneWBGene00000395
WormFluxgeneWBGene00000395
NDBlocus_tagCELE_ZK112.7
PanthergeneCAEEL|WormBase=WBGene00000395|UniProtKB=P34616
familyPTHR24028
NCBIgene176085
RefSeqproteinNM_066286.6
SwissProtUniProtAccP34616
UniProt_GCRPUniProtAccP34616
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcdh
Allele (171)
Legacy_information[Pettitt J, Wood WB] Encodes a cadherin-related protein. 10kb transcript detected on Northern blots, in late-stage embryo and L1 larval RNA. lac-Z driven by a 5 kb promoter fragment results in lac-Z expression in seam cells in comma-stage through to 3-fold embryos. A few other as yet unidentified hypodermal cells also stain in the anterior.
StrainWBStrain00026516
WBStrain00030884
WBStrain00030896
WBStrain00030900
WBStrain00040717
WBStrain00028923
WBStrain00028943
RNASeq_FPKM (74)
GO_annotation (22)
Ortholog (23)
ParalogWBGene00019994Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000396Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00000402Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000397Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000399Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000401Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017576Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00022103Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptioncdh-3 encodes a member of the cadherin superfamily that affects morphogenesis of tail epithelia and excretory function; expressed predominantly in developing epithelial cells, and also expressed in the AC, excretory cell, various neurons, and vulval cells during different stages of development.Paper_evidenceWBPaper00002636
WBPaper00011717
WBPaper00017629
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable structural molecule activity. Involved in basement membrane disassembly and nematode male tail tip morphogenesis. Located in basement membrane; cytoplasm; and plasma membrane. Expressed in several structures, including HSN; VC neuron; anchor cell; epithelial cell; and ventral nerve cord.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK112.7
Corresponding_CDS_historyZK112.7:wp246
Corresponding_transcriptZK112.7.1
Other_sequenceTcir_isotig12995
Associated_featureWBsf667100
WBsf667101
WBsf993126
WBsf993127
WBsf993128
WBsf993129
WBsf1015302
WBsf1015303
WBsf1015304
WBsf227018
Experimental_infoRNAi_resultWBRNAi00021816Inferred_automaticallyRNAi_primary
WBRNAi00059125Inferred_automaticallyRNAi_primary
WBRNAi00107682Inferred_automaticallyRNAi_primary
WBRNAi00005441Inferred_automaticallyRNAi_primary
Expr_pattern (16)
Drives_constructWBCnstr00000052
WBCnstr00000798
WBCnstr00001679
WBCnstr00004655
WBCnstr00004656
WBCnstr00004661
WBCnstr00005449
WBCnstr00005450
WBCnstr00005451
WBCnstr00005454
WBCnstr00005455
WBCnstr00005456
WBCnstr00005457
WBCnstr00005459
WBCnstr00006137
WBCnstr00006139
WBCnstr00006510
WBCnstr00006511
WBCnstr00006669
WBCnstr00006683
WBCnstr00006686
WBCnstr00006854
WBCnstr00006855
WBCnstr00010351
WBCnstr00015711
WBCnstr00015712
WBCnstr00015725
WBCnstr00015726
WBCnstr00015727
WBCnstr00015728
WBCnstr00017241
WBCnstr00017242
WBCnstr00017997
WBCnstr00017998
WBCnstr00017999
WBCnstr00018000
WBCnstr00018001
WBCnstr00018995
WBCnstr00018996
WBCnstr00018998
WBCnstr00019151
WBCnstr00019152
WBCnstr00019197
WBCnstr00019198
WBCnstr00019199
WBCnstr00019200
WBCnstr00019201
WBCnstr00019392
WBCnstr00019394
WBCnstr00019610
WBCnstr00019611
WBCnstr00021182
WBCnstr00021184
WBCnstr00021187
WBCnstr00021448
WBCnstr00022479
WBCnstr00022480
WBCnstr00022481
WBCnstr00022482
WBCnstr00022654
WBCnstr00022868
WBCnstr00037572
WBCnstr00038160
Construct_productWBCnstr00001679
WBCnstr00006510
WBCnstr00006511
WBCnstr00015725
WBCnstr00015726
WBCnstr00015727
WBCnstr00015730
WBCnstr00037572
Microarray_resultsSMD_ZK112.7
179837_s_at
A_12_P104161
Aff_ZK112.7
GPL13394_WBGene00000395
GPL13914_ZK112.7
GPL14144_ZK112.7_6416-6475_0.810_109_C
GPL14144_ZK112.7_9760-9819_0.938_2_B
GPL14144_ZK112.7_9892-9951_0.935_3_A
GPL19516_CGZ0056251
GPL21109_ZK112.7
GPL3518_CE00378
GPL8304_CE_WBGene00000395_A
GPL8673_ZK112_7P08776
GPL8673_ZK112_7P09252
GPL8673_ZK112_7P09796
GPL9450_ZK112.7
cea2.p.81673
Expression_cluster (176)
Interaction (48)
Map_infoMapIIIPosition-0.618657Error0.003852
PositivePositive_cloneZK112Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4191
5266
Pseudo_map_position
Reference (66)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene