WormBase Tree Display for Gene: WBGene00000397

WBGene00000397 SMap: S_parent: Sequence: F08B4
  Identity: Version: 2
    Name: CGC_name: cdh-5 Person_evidence: WBPerson698
      Sequence_name: F08B4.2
      Molecular_name (12)
      Other_name: CELE_F08B4.2 Accession_evidence: NDB BX284604
      Public_name: cdh-5
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change (2)
      Split_into: WBGene00255375
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cdh
    Allele: WBVar00087826 Inferred_automatically: From strain object: BA1070
      WBVar00430871
      WBVar00430872
      WBVar00430873
      WBVar00430874
      WBVar00430875
      WBVar00430876
      WBVar00430877
      WBVar00430878
      WBVar01500079
      WBVar00430879
      WBVar00430880
      WBVar00430881
      WBVar00430882
      WBVar00430883
      WBVar02020996
      WBVar00430884
      WBVar02020997
      WBVar00142461
      WBVar01498996
      WBVar02124703
      WBVar01499396
      WBVar00191169
      WBVar00191170
      WBVar02058099
      WBVar02058100
      WBVar02058101
      WBVar00098884
      WBVar02123819
      WBVar01831823
      WBVar02123088
      WBVar02008252
      WBVar01794943
      WBVar01499633
      WBVar00052922
      WBVar02124596
      WBVar00573727
      WBVar00573728
      WBVar01854500
      WBVar01854501
      WBVar01854502
      WBVar00093171
      WBVar01854503
      WBVar01854504
      WBVar01854505
      WBVar01854506
      WBVar01854507
      WBVar01854508
      WBVar01854509
      WBVar01668793
      WBVar01498928
      WBVar00927793
      WBVar00927794
      WBVar00927795
      WBVar02124800
      WBVar00927796
      WBVar00927797
      WBVar00927798
      WBVar00927799
      WBVar00927800
      WBVar00927801
      WBVar00927802
      WBVar00927803
      WBVar00927804
      WBVar00927805
      WBVar00927806
      WBVar00927807
      WBVar00927808
      WBVar00927809
      WBVar00927810
      WBVar00927811
      WBVar00927812
      WBVar00927813
      WBVar00927814
      WBVar00927815
      WBVar00927816
      WBVar00927817
      WBVar00927818
      WBVar01500245
      WBVar00927819
      WBVar00927820
      WBVar00927821
    Strain: WBStrain00032300
      WBStrain00000426
    RNASeq_FPKM (74)
    GO_annotation: 00022207
      00022208
      00022209
      00022210
      00107328
      00107329
      00107330
    Ortholog (44)
    Paralog: WBGene00000399 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019994 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000395 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000396 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000401 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000402 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00017576 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022103 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: a homolog of cadherin. Paper_evidence: WBPaper00004508
          Curator_confirmed: WBPerson480
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable calcium ion binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; Usher syndrome type 1F; and autosomal recessive nonsyndromic deafness 23. Is an ortholog of human PCDH15 (protocadherin related 15). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0110832 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:14674)
      DOID:0110831 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:14674)
      DOID:0110481 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:14674)
  Molecular_info: Corresponding_CDS: F08B4.2a
      F08B4.2b
      F08B4.2c
      F08B4.2d
    Corresponding_CDS_history: F08B4.2a:wp242
      F08B4.2a:wp261
      F08B4.2c:wp261
    Corresponding_transcript: F08B4.2a.1
      F08B4.2b.1
      F08B4.2c.1
      F08B4.2d.1
    Other_sequence: JI465114.1
      JI165597.1
      JI472854.1
      JI478310.1
      BMC06462_1
    Associated_feature: WBsf997263
      WBsf1017874
      WBsf228725
      WBsf228726
  Experimental_info: RNAi_result: WBRNAi00012865 Inferred_automatically: RNAi_primary
      WBRNAi00043966 Inferred_automatically: RNAi_primary
      WBRNAi00000523 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1012101
      Expr1030218
      Expr1147941
      Expr2009803
      Expr2028043
    Drives_construct: WBCnstr00037570
    Construct_product: WBCnstr00037570
    Microarray_results (18)
    Expression_cluster (257)
    Interaction: WBInteraction000151546
      WBInteraction000170462
      WBInteraction000275574
      WBInteraction000368444
      WBInteraction000399737
  Map_info: Map: IV Position: 3.92961 Error: 0.000991
    Positive: Positive_clone: F08B4 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4874
    Pseudo_map_position
  Reference: WBPaper00004508
    WBPaper00013424
    WBPaper00027233
    WBPaper00032446
    WBPaper00038491
    WBPaper00055090
    WBPaper00058371
    WBPaper00058555
    WBPaper00064495
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene