WormBase Tree Display for Variation: WBVar00098884
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| WBVar00098884 | Name | Public_name | WBVar00098884 | ||
|---|---|---|---|---|---|
| Other_name | pas3743 | ||||
| snp_F08B4[1] | |||||
| cewivar00040553 | |||||
| F08B4.2a.1:c.*239T>C | |||||
| F08B4.2d.1:c.*298T>C | |||||
| F08B4.2b.1:c.*239T>C | |||||
| F08B4.2c.1:c.*298T>C | |||||
| HGVSg | CHROMOSOME_IV:g.8676487T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | F08B4 | |
| Flanking_sequences | tgattccaacaccagattatcatcaacgaacacatccaaatcaacataaatcaatactttaatcaattaaaattcaaaatattatttttgttaaaacttctatctttcaaagaatctcatgttcctcaatttctccccattttctttcagcattttcactttttcattcatttcgctcaatttgttcatcaactccttgtgacgtcccaatataggtgctcaaaatgtctaatttatatcaattttctcaccttcattctttttctctctcattcatccacatttgccagtgatttgtgt | caccccgccgtttcagtgactttaaattatttattcgacaattttaatttttttgcatgcttacaaatttgttgaaacggtgtatttacttgaaatatttttttaaatacataatacaatttaatgcagaaagtgttcataatagaggtgcatgcgggtcgacccgtatttgtaaccgaaatgggacgcgcgtcgacccgcgacccgctgcggcaaaaacgtgaagaaattaaatttatattttgaaataatataattgcaatggtgtgtttttaaactacgcgatgggtcgcgggtcga | |||
| Mapping_target | F08B4 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (42) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| History | Acquires_merge | WBVar01274600 | |||
| WBVar00244048 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000397 | |||
| Transcript | F08B4.2c.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F08B4.2c.1:c.*298T>C | ||||
| cDNA_position | 4627 | ||||
| Exon_number | 24/24 | ||||
| F08B4.2d.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F08B4.2d.1:c.*298T>C | ||||
| cDNA_position | 4402 | ||||
| Exon_number | 24/24 | ||||
| F08B4.2a.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F08B4.2a.1:c.*239T>C | ||||
| cDNA_position | 4796 | ||||
| Exon_number | 24/24 | ||||
| F08B4.2b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F08B4.2b.1:c.*239T>C | ||||
| cDNA_position | 4285 | ||||
| Exon_number | 23/23 | ||||
| Reference | WBPaper00004703 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
