WormBase Tree Display for Gene: WBGene00017500

WBGene00017500 SMap: S_parent: Sequence: F15E11
  Identity: Version: 2
    Name: CGC_name: pud-2.2 Person_evidence: WBPerson143
      Sequence_name: F15E11.14
      Molecular_name: F15E11.14
        F15E11.14.1
        CE16999
      Other_name: F15E11.f Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_F15E11.14 Accession_evidence: NDB BX284605
      Public_name: pud-2.2
    DB_info: Database: AceView gene 5C801
        WormQTL gene WBGene00017500
        WormFlux gene WBGene00017500
        NDB locus_tag CELE_F15E11.14
        NCBI gene 178710
        RefSeq protein NM_071237.1
        TREEFAM TREEFAM_ID TF319694
        TrEMBL UniProtAcc G5EBF3
        UniProt_GCRP UniProtAcc G5EBF3
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 20 Dec 2012 13:04:39 WBPerson2970 Name_change: CGC_name: pud-2.2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pud
    Allele (19)
    RNASeq_FPKM (74)
    Ortholog (16)
    Paralog: WBGene00017490 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00017498 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00017499 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00017501 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00044489 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00044490 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00021236 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Concise_description: pud-2.2, along with pud-2.1, encodes a 17.4 kDa protein (CE16999) with unknown function that is seven-fold more abundant in glp-1 mutant hermaphrodites (which lack a germline) than in normal hermaphrodites; in addition, the protein products of PUD-2.2/PUD-2.1 are more abundant in daf-2 mutant vs. wild-type adults during a temperature shift from 15 to 25 degrees C; pud-2.2(RNAi) animals have no obvious mutant phenotype (i.e., they have no obvious defect in fertility or germline maintenance); the PUD-2.2/PUD-2.1 proteins belong to a nematode-specific family including the paralogs PUD-1.1, PUD-1.2, PUD-3, and PUD-4. Paper_evidence: WBPaper00006020
            WBPaper00030894
          Curator_confirmed: WBPerson1843
          Date_last_updated: 12 Jun 2015 00:00:00
      Automated_description: Expressed in hypodermis. Is predicted to encode a protein with the following domains: Up-Regulated in long-lived daf-2 and Up-regulated in Daf-2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F15E11.14
    Corresponding_transcript: F15E11.14.1
    Associated_feature: WBsf999496
      WBsf1019289
      WBsf231502
  Experimental_info: RNAi_result: WBRNAi00070096 Inferred_automatically: RNAi_primary
      WBRNAi00044734 Inferred_automatically: RNAi_primary
      WBRNAi00044722 Inferred_automatically: RNAi_primary
      WBRNAi00013371 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr11081
      Expr1148700
      Expr2015180
    Drives_construct: WBCnstr00017878
      WBCnstr00017881
      WBCnstr00018112
      WBCnstr00027252
    Construct_product: WBCnstr00017876
      WBCnstr00017878
      WBCnstr00017881
      WBCnstr00018112
      WBCnstr00027252
    Antibody: WBAntibody00001279
    Microarray_results (19)
    Expression_cluster (269)
    Interaction: WBInteraction000520383
      WBInteraction000554693
      WBInteraction000554695
      WBInteraction000556766
      WBInteraction000556768
      WBInteraction000581022
      WBInteraction000583424
  Map_info: Map: V Position: -14.8758
    Positive: Positive_clone: F15E11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00024325
    WBPaper00027024
    WBPaper00030894
    WBPaper00037428
    WBPaper00046929
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene