WormBase Tree Display for Gene: WBGene00017499
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| WBGene00017499 | SMap | S_parent | Sequence | F15E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pud-1.1 | Person_evidence | WBPerson143 | |||||
| Sequence_name | F15E11.13 | ||||||||
| Molecular_name | F15E11.13 | ||||||||
| F15E11.13.1 | |||||||||
| CE25224 | |||||||||
| Other_name | CELE_F15E11.13 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | pud-1.1 | ||||||||
| DB_info | Database | AceView | gene | 5C809 | |||||
| WormQTL | gene | WBGene00017499 | |||||||
| WormFlux | gene | WBGene00017499 | |||||||
| NDB | locus_tag | CELE_F15E11.13 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017499|UniProtKB=G5EET8 | |||||||
| family | PTHR31557 | ||||||||
| NCBI | gene | 178714 | |||||||
| RefSeq | protein | NM_001374907.2 | |||||||
| TREEFAM | TREEFAM_ID | TF319694 | |||||||
| TrEMBL | UniProtAcc | G5EET8 | |||||||
| UniProt_GCRP | UniProtAcc | G5EET8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 20 Dec 2012 13:04:39 | WBPerson2970 | Name_change | CGC_name | pud-1.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pud | ||||||||
| Allele (18) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (14) | |||||||||
| Paralog | WBGene00017490 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WBGene00017498 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00017501 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00017500 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00044489 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00044490 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00021236 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | pud-1.1, along with pud-1.2, encodes a protein (CE25224) of unknown function; the PUD-1.1/PUD-1.2 proteins are present at significantly higher levels in daf-2 mutant vs. wild-type adults during a temperature shift from 15 to 25 degrees C; pud-1.1(RNAi) animals have no obvious mutant phenotype (i. e., they have no obvious defect in fertility or germline maintenance); the PUD-1.1/PUD-1.2 proteins belong to a nematode-specific family including the paralogs PUD-2.1, PUD-2.2, PUD-3, and PUD-4. | Paper_evidence | WBPaper00030894 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Jun 2015 00:00:00 | ||||||||
| Automated_description | Expressed in hypodermis and intestine. Is predicted to encode a protein with the following domains: Up-Regulated in long-lived daf-2 and Up-regulated in Daf-2. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F15E11.13 | |||||||
| Corresponding_transcript | F15E11.13.1 | ||||||||
| Associated_feature | WBsf231504 | ||||||||
| WBsf231505 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00044733 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044732 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11080 | ||||||||
| Expr1011659 | |||||||||
| Expr1148699 | |||||||||
| Expr2015177 | |||||||||
| Drives_construct | WBCnstr00017876 | ||||||||
| WBCnstr00017880 | |||||||||
| WBCnstr00017882 | |||||||||
| WBCnstr00018112 | |||||||||
| WBCnstr00027253 | |||||||||
| Construct_product | WBCnstr00017876 | ||||||||
| WBCnstr00017878 | |||||||||
| WBCnstr00017880 | |||||||||
| WBCnstr00017882 | |||||||||
| WBCnstr00018112 | |||||||||
| WBCnstr00027253 | |||||||||
| Antibody | WBAntibody00001282 | ||||||||
| Expression_cluster (176) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | V | Position | -14.8668 | |||||
| Positive | Positive_clone | F15E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024325 | ||||||||
| WBPaper00030894 | |||||||||
| WBPaper00037428 | |||||||||
| WBPaper00046929 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-14.8654) | |||||||||
| Method | Gene |
