WormBase Tree Display for Gene: WBGene00021236
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| WBGene00021236 | SMap | S_parent | Sequence | Y19D10B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pud-1.2 | Person_evidence | WBPerson143 | |||||
| Sequence_name | Y19D10B.7 | ||||||||
| Molecular_name | Y19D10B.7 | ||||||||
| Y19D10B.7.1 | |||||||||
| CE25224 | |||||||||
| Other_name | Y19D10B.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y19D10B.7 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | pud-1.2 | ||||||||
| DB_info | Database | AceView | gene | 5C800 | |||||
| WormFlux | gene | WBGene00021236 | |||||||
| NDB | locus_tag | CELE_Y19D10B.7 | |||||||
| NCBI | gene | 178709 | |||||||
| RefSeq | protein | NM_071236.7 | |||||||
| TREEFAM | TREEFAM_ID | TF319694 | |||||||
| TrEMBL | UniProtAcc | G5EET8 | |||||||
| UniProt_GCRP | UniProtAcc | G5EET8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 20 Dec 2012 13:04:39 | WBPerson2970 | Name_change | CGC_name | pud-1.2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pud | ||||||||
| Allele (20) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (14) | |||||||||
| Paralog | WBGene00017490 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00017498 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00017499 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00017500 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00017501 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00044489 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00044490 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Concise_description | PUD-1.2, along with PUD-1.1, encodes a protein (CE25224) of unknown function; the PUD-1.2/PUD-1.1 proteins are present at significantly higher levels in daf-2 mutant vs. wild-type adults during a temperature shift from 15 to 25 degrees C; pud-1.2(RNAi) animals have no obvious mutant phenotype (i. e., they have no obvious defect in fertility or germline maintenance); the PUD-1.2/PUD-1.1 proteins belong to a nematode-specific family including the paralogs PUD-2.1, PUD-2.2, PUD-3, and PUD-4. | Paper_evidence | WBPaper00030894 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Jun 2015 00:00:00 | ||||||||
| Automated_description | Expressed in hypodermis and intestine. Is predicted to encode a protein with the following domains: Up-Regulated in long-lived daf-2 and Up-regulated in Daf-2. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y19D10B.7 | |||||||
| Corresponding_transcript | Y19D10B.7.1 | ||||||||
| Other_sequence | CBC06145_1 | ||||||||
| Associated_feature | WBsf233409 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00044733 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036705 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044732 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11080 | ||||||||
| Expr1159169 | |||||||||
| Expr2015178 | |||||||||
| Drives_construct | WBCnstr00017876 | ||||||||
| WBCnstr00017880 | |||||||||
| WBCnstr00017882 | |||||||||
| WBCnstr00018112 | |||||||||
| WBCnstr00024611 | |||||||||
| Construct_product | WBCnstr00017876 | ||||||||
| WBCnstr00017878 | |||||||||
| WBCnstr00017880 | |||||||||
| WBCnstr00017882 | |||||||||
| WBCnstr00018112 | |||||||||
| WBCnstr00024611 | |||||||||
| Antibody | WBAntibody00001282 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (276) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | V | Position | -14.8764 | |||||
| Positive | Positive_clone | Y19D10B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024325 | ||||||||
| WBPaper00030894 | |||||||||
| WBPaper00037428 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
