WormBase Tree Display for Gene: WBGene00017490
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| WBGene00017490 | SMap | S_parent | Sequence | F15E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pud-2.1 | Person_evidence | WBPerson143 | |||||
| Sequence_name | F15E11.1 | ||||||||
| Molecular_name | F15E11.1 | ||||||||
| F15E11.1.1 | |||||||||
| CE16999 | |||||||||
| Other_name | 5C820 | Accession_evidence | EMBL | AF292049 | |||||
| CELE_F15E11.1 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | pud-2.1 | ||||||||
| DB_info | Database | AceView | gene | 5C808 | |||||
| WormQTL | gene | WBGene00017490 | |||||||
| WormFlux | gene | WBGene00017490 | |||||||
| NDB | locus_tag | CELE_F15E11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017490|UniProtKB=G5EBF3 | |||||||
| family | PTHR31557 | ||||||||
| NCBI | gene | 178713 | |||||||
| RefSeq | protein | NM_071239.5 | |||||||
| TREEFAM | TREEFAM_ID | TF319694 | |||||||
| TrEMBL | UniProtAcc | G5EBF3 | |||||||
| UniProt_GCRP | UniProtAcc | G5EBF3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 20 Dec 2012 13:04:39 | WBPerson2970 | Name_change | CGC_name | pud-2.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pud | ||||||||
| Allele (18) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (16) | |||||||||
| Paralog | WBGene00017501 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WBGene00044489 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00044490 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00017498 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00017500 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00021236 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00017499 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| Structured_description | Concise_description | pud-2.1, along with pud-2.2, encodes a 17.4 kDa protein (CE16999) with unknown function that is seven-fold more abundant in glp-1 mutant hermaphrodites (which lack a germline) than in normal hermaphrodites; in addition, the protein products of pud-2.1/pud-2.2 are more abundant in daf-2 mutant vs. wild-type adults during a temperature shift from 15 to 25 degrees C; pud-2.1(RNAi) animals have no obvious mutant phenotype (i.e., they have no obvious defect in fertility or germline maintenance); the PUD-2.1/PUD-2.2 proteins belong to a nematode-specific family including the paralogs PUD-1.1, PUD-1.2, PUD-3, and PUD-4. | Paper_evidence | WBPaper00006020 | |||||
| WBPaper00030894 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 12 Jun 2015 00:00:00 | ||||||||
| Automated_description | Expressed in hypodermis and intestine. Is predicted to encode a protein with the following domains: Up-Regulated in long-lived daf-2 and Up-regulated in Daf-2. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F15E11.1 | |||||||
| Corresponding_transcript | F15E11.1.1 | ||||||||
| Other_sequence | FD514452.1 | ||||||||
| FG621239.1 | |||||||||
| CRC01525_1 | |||||||||
| CR03635 | |||||||||
| CRC12267_1 | |||||||||
| CR06969 | |||||||||
| FD515338.1 | |||||||||
| CSC00791_1 | |||||||||
| Associated_feature | WBsf999498 | ||||||||
| WBsf1019290 | |||||||||
| WBsf233411 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00070096 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044734 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044722 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013371 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11081 | ||||||||
| Expr1025991 | |||||||||
| Expr1148695 | |||||||||
| Expr2015179 | |||||||||
| Expr2033415 | |||||||||
| Drives_construct | WBCnstr00017878 | ||||||||
| WBCnstr00017881 | |||||||||
| WBCnstr00018112 | |||||||||
| WBCnstr00020213 | |||||||||
| WBCnstr00027256 | |||||||||
| Construct_product | WBCnstr00017876 | ||||||||
| WBCnstr00017878 | |||||||||
| WBCnstr00017881 | |||||||||
| WBCnstr00018112 | |||||||||
| WBCnstr00027256 | |||||||||
| Antibody | WBAntibody00001279 | ||||||||
| Expression_cluster (234) | |||||||||
| Interaction (71) | |||||||||
| Map_info | Map | V | Position | -14.8716 | |||||
| Positive | Positive_clone | F15E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024325 | ||||||||
| WBPaper00027024 | |||||||||
| WBPaper00028360 | |||||||||
| WBPaper00030894 | |||||||||
| WBPaper00056909 | |||||||||
| WBPaper00061938 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
