WormBase Tree Display for Gene: WBGene00017500
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WBGene00017500 | SMap | S_parent | Sequence | F15E11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | pud-2.2 | Person_evidence | WBPerson143 | |||||
Sequence_name | F15E11.14 | ||||||||
Molecular_name | F15E11.14 | ||||||||
F15E11.14.1 | |||||||||
CE16999 | |||||||||
Other_name | F15E11.f | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_F15E11.14 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | pud-2.2 | ||||||||
DB_info | Database | AceView | gene | 5C801 | |||||
WormQTL | gene | WBGene00017500 | |||||||
WormFlux | gene | WBGene00017500 | |||||||
NDB | locus_tag | CELE_F15E11.14 | |||||||
NCBI | gene | 178710 | |||||||
RefSeq | protein | NM_071237.1 | |||||||
TREEFAM | TREEFAM_ID | TF319694 | |||||||
TrEMBL | UniProtAcc | G5EBF3 | |||||||
UniProt_GCRP | UniProtAcc | G5EBF3 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 20 Dec 2012 13:04:39 | WBPerson2970 | Name_change | CGC_name | pud-2.2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pud | ||||||||
Allele | WBVar01499528 | ||||||||
WBVar02157774 | |||||||||
WBVar02122641 | |||||||||
WBVar01499167 | |||||||||
WBVar01499537 | |||||||||
WBVar02123934 | |||||||||
WBVar02122841 | |||||||||
WBVar01499740 | |||||||||
WBVar02123415 | |||||||||
WBVar02121039 | |||||||||
WBVar02121241 | |||||||||
WBVar02121460 | |||||||||
WBVar02124610 | |||||||||
WBVar02124426 | |||||||||
WBVar00091230 | |||||||||
WBVar01499496 | |||||||||
WBVar02124813 | |||||||||
WBVar01499316 | |||||||||
WBVar01500066 | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (16) | |||||||||
Paralog | WBGene00017490 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WormBase-Compara | |||||||||
WBGene00017498 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00017499 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00017501 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00044489 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00044490 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00021236 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Structured_description | Concise_description | pud-2.2, along with pud-2.1, encodes a 17.4 kDa protein (CE16999) with unknown function that is seven-fold more abundant in glp-1 mutant hermaphrodites (which lack a germline) than in normal hermaphrodites; in addition, the protein products of PUD-2.2/PUD-2.1 are more abundant in daf-2 mutant vs. wild-type adults during a temperature shift from 15 to 25 degrees C; pud-2.2(RNAi) animals have no obvious mutant phenotype (i.e., they have no obvious defect in fertility or germline maintenance); the PUD-2.2/PUD-2.1 proteins belong to a nematode-specific family including the paralogs PUD-1.1, PUD-1.2, PUD-3, and PUD-4. | Paper_evidence | WBPaper00006020 | |||||
WBPaper00030894 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 12 Jun 2015 00:00:00 | ||||||||
Automated_description | Expressed in hypodermis. Is predicted to encode a protein with the following domains: Up-Regulated in long-lived daf-2 and Up-regulated in Daf-2. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F15E11.14 | |||||||
Corresponding_transcript | F15E11.14.1 | ||||||||
Associated_feature | WBsf999496 | ||||||||
WBsf1019289 | |||||||||
WBsf231502 | |||||||||
Experimental_info | RNAi_result | WBRNAi00070096 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00044734 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00044722 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00013371 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr11081 | ||||||||
Expr1148700 | |||||||||
Expr2015180 | |||||||||
Drives_construct | WBCnstr00017878 | ||||||||
WBCnstr00017881 | |||||||||
WBCnstr00018112 | |||||||||
WBCnstr00027252 | |||||||||
Construct_product | WBCnstr00017876 | ||||||||
WBCnstr00017878 | |||||||||
WBCnstr00017881 | |||||||||
WBCnstr00018112 | |||||||||
WBCnstr00027252 | |||||||||
Antibody | WBAntibody00001279 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (269) | |||||||||
Interaction | WBInteraction000520383 | ||||||||
WBInteraction000554693 | |||||||||
WBInteraction000554695 | |||||||||
WBInteraction000556766 | |||||||||
WBInteraction000556768 | |||||||||
WBInteraction000581022 | |||||||||
WBInteraction000583424 | |||||||||
Map_info | Map | V | Position | -14.8758 | |||||
Positive | Positive_clone | F15E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00024325 | ||||||||
WBPaper00027024 | |||||||||
WBPaper00030894 | |||||||||
WBPaper00037428 | |||||||||
WBPaper00046929 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |