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WormBase Tree Display for Gene: WBGene00012134

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Name Class

WBGene00012134SMapS_parentSequenceT28F3
IdentityVersion1
NameSequence_nameT28F3.8
Molecular_nameT28F3.8
T28F3.8.1
CE46964
Other_nameCELE_T28F3.8Accession_evidenceNDBBX284604
Public_nameT28F3.8
DB_infoDatabaseAceViewgene4S250
WormQTLgeneWBGene00012134
WormFluxgeneWBGene00012134
NDBlocus_tagCELE_T28F3.8
NCBIgene178511
RefSeqproteinNM_070674.7
TREEFAMTREEFAM_IDTF316333
TrEMBLUniProtAccQ9XUC0
UniProt_GCRPUniProtAccQ9XUC0
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:53WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (90)
RNASeq_FPKM (74)
Ortholog (20)
ParalogWBGene00008194Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00012133Caenorhabditis elegansFrom_analysismodENCODE_Pseudogenes
WBGene00013118Caenorhabditis elegansFrom_analysismodENCODE_Pseudogenes
WormBase-Compara
WBGene00000792Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018547Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018607Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in I5 neuron; cholinergic neurons; head mesodermal cell; and retrovesicular ganglion based on RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and proteomic studies. Is affected by seventeen chemicals including bisphenol S; stavudine; and Psoralens based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST28F3.8
Corresponding_CDS_historyT28F3.8:wp229
Corresponding_transcriptT28F3.8.1
Associated_featureWBsf667690
WBsf668587
Experimental_infoRNAi_resultWBRNAi00057187Inferred_automaticallyRNAi_primary
WBRNAi00054438Inferred_automaticallyRNAi_primary
WBRNAi00036100Inferred_automaticallyRNAi_primary
WBRNAi00019413Inferred_automaticallyRNAi_primary
Expr_patternExpr1017712
Expr1157982
Expr2006629
Expr2024846
Drives_constructWBCnstr00030117
Construct_productWBCnstr00030117
Microarray_results (17)
Expression_clusterWBPaper00030922:glycosylated_protein
WBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032528:L3_enriched
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00038168:lin-15B(n744)_downregulated
WBPaper00038237:age-1_upregulated_intestine_rescue
WBPaper00038237:age-1_upregulated_neuron_rescue
WBPaper00038237:age-1_upregulated_nontransgenic
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:flat_dev_expression
WBPaper00045257:bar-1(ga80)_downregulated
WBPaper00045401:N.parisii_64h_downregulated
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049954:BPS_upregulated
WBPaper00050080:rbr-2(tm3141)_upregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
WBPaper00050332:skn-1(RNAi)_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051305:vit-2(ac3)_downregulated
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053302:stavudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
WBPaper00053615:SMO-1_target
WBPaper00053814:15C_downregulated_PY79
WBPaper00054410:set-26(tm2467)_downregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055626:pry-1(mu38)_upregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056284:ints-1(RNAi)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056826:hmc_biased
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00059253:sucrose_stearic-acid_upregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059987:Wounding_downregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060661:sensory-neuron_depleted
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061527:R10H10.3-T21H3.1
WBPaper00062078:NMR-HspB1_regulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062440:crh-1(n3315)_upregulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_protein
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064005:starvation_upregulated_N2_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064156:lbp-3(overexpress)_upregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00065029:cadmium_upregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
WBPaper00065258:anchor-cell_depleted
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065734:unc-25(e156)_upregulated
WBPaper00065835:Day5_vs_Day1_downregulated
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
WBPaper00065841:3_1
WBPaper00065841:3_2
WBPaper00065841:3_5
WBPaper00065841:30_0
WBPaper00065841:93_0
WBPaper00065877:rege-1(imm070)_upregulated_OP50
WBPaper00065877:rege-1(imm070)_upregulated_PA14
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_downregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
cgc4489_group_24
WBPaper00005124:cholesterol_10-9M_regulated
WBPaper00025099:NI_specific
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Enriched_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00030839:Embryo_A_Class
WBPaper00032062:age_regulated_genes
WBPaper00032948:StarveUp3
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-8_regulated
WBPaper00035892:KIM5_vs_OP50_Up
WBPaper00035892:Y.pestis_regulated
WBPaper00037695:WC_5-day
WBPaper00038060:SUMO-1_downregulated
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038304:octr-1_regulated
WBPaper00038427:lin-54_embryo_changed
WBPaper00038462:aging_downregulated
WBPaper00040426:CYD-1_CDK-4_downregulated
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040963:Q100_up
WBPaper00040963:Q200_up
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041002:HF_11d_0.2mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041211:RPW-24_Down
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041906:I-3690_vs_OP50_3d
WBPaper00044091:Bpseudomallei_repressed_8h
WBPaper00044091:Bpseudomallei_repressed_12h
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00045673:colistin_upregulated
WBPaper00048637:lin-35(n745)_starvation_downregulated
WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
Interaction (63)
Map_infoPositivePositive_cloneT28F3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV16.4575
ReferenceWBPaper00065331
MethodGene