WormBase Tree Display for Expression_cluster: WBPaper00038060:SUMO-1_downregulated

WBPaper00038060:SUMO-1_downregulated Description: Genes showing < 0.5-fold down-regulated expression (p < 0.001) both in aex-3::His-SUMO-1 or myo-4::His-SUMO-1 C. elegans.
  Species: Caenorhabditis elegans
  Algorithm: The Linear Models for Microarray Data (Limma) package using linear model fitting for statistical testing with empirical Bayes variance smoothing procedure were applied to detection of differentially expressed genes in aex-3::His-SUMO-1 and myo-4::His-SUMO-1 nematodes when compared to N2. The obtained p values were corrected for multiple testing using Benjamini and Hochberg false discovery rate procedure. For downstream analysis, genes with FDR corrected p < 0.001 were used including 1,805 probe sets from aex-3::His-SUMO-1 versus N2 comparison (899 under- and 906 overexpressed) and 1,342 probe sets from myo-4::His-SUMO-1 versus N2 comparison (774 under and 568 overexpressed).
  Reference: WBPaper00038060
  Microarray_results (416)
  Gene (396)
  Attribute_of: Microarray_experiment: WBPaper00038060:N2_1
      WBPaper00038060:N2_2
      WBPaper00038060:N2_3
      WBPaper00038060:aex-3p-his-SUMO-1-JS62_1
      WBPaper00038060:aex-3p-his-SUMO-1-JS62_2
      WBPaper00038060:aex-3p-his-SUMO-1-JS62_3
      WBPaper00038060:myo-4p-his-SUMO-1-JS63_1
      WBPaper00038060:myo-4p-his-SUMO-1-JS63_2
      WBPaper00038060:myo-4p-his-SUMO-1-JS63_3
  Regulation: Regulated_by_gene: HGNC:12502
  Associated_with: Life_stage: WBls:0000024