WormBase Tree Display for Gene: WBGene00018547
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| WBGene00018547 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | clec-78 | Person_evidence | WBPerson261 | |||||
| WBPerson655 | |||||||||
| Sequence_name | F47C12.2 | ||||||||
| Molecular_name | F47C12.2 | ||||||||
| F47C12.2.1 | |||||||||
| CE48546 | |||||||||
| Other_name | CELE_F47C12.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | clec-78 | ||||||||
| DB_info | Database | AceView | gene | 4E751 | |||||
| WormQTL | gene | WBGene00018547 | |||||||
| WormFlux | gene | WBGene00018547 | |||||||
| NDB | locus_tag | CELE_F47C12.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018547|UniProtKB=Q20531 | |||||||
| family | PTHR24033 | ||||||||
| NCBI | gene | 185915 | |||||||
| RefSeq | protein | NM_068053.5 | |||||||
| TrEMBL | UniProtAcc | Q20531 | |||||||
| UniProt_GCRP | UniProtAcc | Q20531 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 28 Sep 2005 17:40:12 | WBPerson2970 | Name_change | CGC_name | clec-78 | ||||
| 3 | 27 Sep 2013 10:35:05 | WBPerson4025 | Event | Acquires_merge | WBGene00018546 | ||||
| Acquires_merge | WBGene00018546 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (471) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00068361 | ||||||||
| 00068362 | |||||||||
| 00068363 | |||||||||
| 00068364 | |||||||||
| 00123673 | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00000792 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00008194 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012134 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013118 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018607 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable calcium ion binding activity and serine-type peptidase activity. Involved in defense response to Gram-positive bacterium. Predicted to be located in extracellular region and membrane. Expressed in pharyngeal muscle cell. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F47C12.2 | |||||||
| Corresponding_CDS_history | F47C12.2:wp239 | ||||||||
| Corresponding_transcript | F47C12.2.1 | ||||||||
| Other_sequence (13) | |||||||||
| Associated_feature (25) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00047636 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00068009 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015176 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047634 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078255 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115912 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019500 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015174 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054579 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr168 | ||||||||
| Expr1013413 | |||||||||
| Expr1019347 | |||||||||
| Expr1037987 | |||||||||
| Expr1037988 | |||||||||
| Expr1151475 | |||||||||
| Expr1151478 | |||||||||
| Expr2010209 | |||||||||
| Expr2028450 | |||||||||
| Microarray_results (49) | |||||||||
| Expression_cluster (216) | |||||||||
| Interaction | WBInteraction000007463 | ||||||||
| WBInteraction000200061 | |||||||||
| WBInteraction000223260 | |||||||||
| WBInteraction000233937 | |||||||||
| WBInteraction000251575 | |||||||||
| WBInteraction000282448 | |||||||||
| WBInteraction000299342 | |||||||||
| WBInteraction000390775 | |||||||||
| WBInteraction000434433 | |||||||||
| WBInteraction000573860 | |||||||||
| Map_info | Map | IV | Position | -1.0599 | Error | 0.01717 | |||
| Positive | Positive_clone | F47C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065560 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
