WormBase Tree Display for Gene: WBGene00018607
expand all nodes | collapse all nodes | view schema
| WBGene00018607 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | chts-1 | Person_evidence | WBPerson1820 | |||||
| Sequence_name | F48E3.8 | ||||||||
| Molecular_name (27) | |||||||||
| Other_name | CELE_F48E3.8 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | chts-1 | ||||||||
| DB_info | Database | AceView | gene | XI128 | |||||
| WormQTL | gene | WBGene00018607 | |||||||
| WormFlux | gene | WBGene00018607 | |||||||
| NDB | locus_tag | CELE_F48E3.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018607|UniProtKB=A8WFH5 | |||||||
| family | PTHR45985 | ||||||||
| NCBI | gene | 181010 | |||||||
| RefSeq | protein | NM_001404203.1 | |||||||
| NM_171729.8 | |||||||||
| NM_001373361.3 | |||||||||
| NM_001373363.2 | |||||||||
| NM_001373360.2 | |||||||||
| NM_001404202.1 | |||||||||
| NM_001373365.4 | |||||||||
| NM_001373362.3 | |||||||||
| NM_001373364.2 | |||||||||
| TREEFAM | TREEFAM_ID | TF316835 | |||||||
| TrEMBL | UniProtAcc | H2L042 | |||||||
| A0A8S4QFG5 | |||||||||
| H2L041 | |||||||||
| A0A4V0IK15 | |||||||||
| A0A8S4QDB1 | |||||||||
| A0A4V0INQ1 | |||||||||
| A0A4V0IKX4 | |||||||||
| A8WFH5 | |||||||||
| A0A4V0INH8 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A4V0INH8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Jan 2022 10:41:14 | WBPerson1983 | Name_change | CGC_name | chts-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | chts | ||||||||
| Allele (196) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005273 | ||||||||
| 00123700 | |||||||||
| Ortholog (23) | |||||||||
| Paralog | WBGene00002983 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00000792 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008194 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012134 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013118 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018547 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | F48E3.8 encodes a polysaccharide deacetylase. | Paper_evidence | WBPaper00041310 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 19 Jul 2012 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in carbohydrate metabolic process. Located in endoplasmic reticulum. Expressed in AIYL; AIYR; and somatic cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F48E3.8a | |||||||
| F48E3.8b | |||||||||
| F48E3.8c | |||||||||
| F48E3.8d | |||||||||
| F48E3.8e | |||||||||
| F48E3.8f | |||||||||
| F48E3.8g | |||||||||
| F48E3.8h | |||||||||
| F48E3.8i | |||||||||
| Corresponding_CDS_history | F48E3.8a:wp184 | ||||||||
| F48E3.8a:wp271 | |||||||||
| F48E3.8b:wp184 | |||||||||
| F48E3.8b:wp271 | |||||||||
| F48E3.8c:wp184 | |||||||||
| Corresponding_transcript | F48E3.8a.1 | ||||||||
| F48E3.8b.1 | |||||||||
| F48E3.8c.1 | |||||||||
| F48E3.8d.1 | |||||||||
| F48E3.8e.1 | |||||||||
| F48E3.8f.1 | |||||||||
| F48E3.8g.1 | |||||||||
| F48E3.8h.1 | |||||||||
| F48E3.8i.1 | |||||||||
| Other_sequence | JI215570.1 | ||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00111585 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00111589 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001017 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111587 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015252 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015084 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047746 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111583 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9549 | ||||||||
| Expr10083 | |||||||||
| Expr10207 | |||||||||
| Expr1016925 | |||||||||
| Expr1038007 | |||||||||
| Expr1151580 | |||||||||
| Expr2003886 | |||||||||
| Expr2022109 | |||||||||
| Drives_construct | WBCnstr00015055 | ||||||||
| WBCnstr00026385 | |||||||||
| Construct_product | WBCnstr00014116 | ||||||||
| WBCnstr00026385 | |||||||||
| Microarray_results (39) | |||||||||
| Expression_cluster (205) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | X | Position | -1.65096 | |||||
| Positive | Positive_clone | F48E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038444 | ||||||||
| WBPaper00041310 | |||||||||
| WBPaper00064648 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
