WormBase Tree Display for Gene: WBGene00002983
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| WBGene00002983 | SMap | S_parent | Sequence | C54G7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | lgx-1 | Person_evidence | WBPerson220 | |||||
| Sequence_name | C54G7.3 | ||||||||
| Molecular_name (27) | |||||||||
| Other_name | pqn-23 | ||||||||
| CELE_C54G7.3 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | lgx-1 | ||||||||
| DB_info | Database | AceView | gene | XG146 | |||||
| WormQTL | gene | WBGene00002983 | |||||||
| WormFlux | gene | WBGene00002983 | |||||||
| NDB | locus_tag | CELE_C54G7.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002983|UniProtKB=H2KZ94 | |||||||
| family | PTHR45985 | ||||||||
| NCBI | gene | 180825 | |||||||
| RefSeq | protein | NM_001373305.2 | |||||||
| NM_001373301.2 | |||||||||
| NM_001373300.2 | |||||||||
| NM_001373304.2 | |||||||||
| NM_001373298.3 | |||||||||
| NM_001373299.2 | |||||||||
| NM_001373303.2 | |||||||||
| NM_001373302.2 | |||||||||
| NM_171690.6 | |||||||||
| TREEFAM | TREEFAM_ID | TF316835 | |||||||
| TrEMBL | UniProtAcc | A0A4V0IKC9 | |||||||
| H2KZ94 | |||||||||
| A0A4V0IK92 | |||||||||
| A0A4V0IKS1 | |||||||||
| A0A4V0ILL1 | |||||||||
| A0A4V0IM10 | |||||||||
| D7SFK4 | |||||||||
| A0A4V0INJ5 | |||||||||
| A0A4V0IND1 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A4V0ILL1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lgx | ||||||||
| Allele (197) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes predicted protein with EGF-like repeats. [GS] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00110443 | ||||||||
| 00110444 | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00018607 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| Structured_description | Concise_description | lgx-1 encodes a polysaccharide deacetylase. | Paper_evidence | WBPaper00041310 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 19 Jul 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds. Predicted to be involved in carbohydrate metabolic process. Expressed in somatic cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C54G7.3a | |||||||
| C54G7.3b | |||||||||
| C54G7.3c | |||||||||
| C54G7.3d | |||||||||
| C54G7.3e | |||||||||
| C54G7.3f | |||||||||
| C54G7.3g | |||||||||
| C54G7.3h | |||||||||
| C54G7.3i | |||||||||
| Corresponding_CDS_history | C54G7.3a:wp271 | ||||||||
| Corresponding_transcript | C54G7.3a.1 | ||||||||
| C54G7.3b.1 | |||||||||
| C54G7.3c.1 | |||||||||
| C54G7.3d.1 | |||||||||
| C54G7.3e.1 | |||||||||
| C54G7.3f.1 | |||||||||
| C54G7.3g.1 | |||||||||
| C54G7.3h.1 | |||||||||
| C54G7.3i.1 | |||||||||
| Other_sequence (13) | |||||||||
| Associated_feature (20) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00043191 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00111584 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111588 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111590 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111586 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000514 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001588 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11801 | ||||||||
| Expr1013811 | |||||||||
| Expr1031383 | |||||||||
| Expr1147169 | |||||||||
| Expr2013146 | |||||||||
| Expr2031378 | |||||||||
| Drives_construct | WBCnstr00036306 | ||||||||
| Construct_product | WBCnstr00036306 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (247) | |||||||||
| Interaction (23) | |||||||||
| Map_info | Map | X | Position | -4.98427 | Error | 0.063372 | |||
| Positive | Positive_clone | C54G7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| GS#Y7 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00041310 | ||||||||
| WBPaper00064648 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
