WormBase Tree Display for Expression_cluster: WBPaper00025141:unc-4::GFP_Enriched_Genes
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| WBPaper00025141:unc-4::GFP_Enriched_Genes | Description | Expressed transcripts enriched in embryonic motor neurons (identified by unc-4::GFP expressing cells). | ||
|---|---|---|---|---|
| Species | Caenorhabditis elegans | |||
| Algorithm | Comparisons of RMA normalized intensities for unc-4::GFP vs reference cells were statistically analyzed using Significance Analysis of Microarrays software (SAM, Stanford). A two-class unpaired analysis of the data was performed to identify genes that differ by 1.7-fold from the wildtype reference at a False Discovery Rate (FDR) of 1%. These genes were considered significantly enriched. | |||
| Reference | WBPaper00025141 | |||
| Microarray_results (1012) | ||||
| Gene (991) | ||||
| Attribute_of | Microarray_experiment | WBPaper00025040:DM39_unc-4::GFP_1 | ||
| WBPaper00025040:DM51_unc-4::GFP_2 | ||||
| WBPaper00025040:DM59_unc-4::GFP_3 | ||||
| Associated_with | Life_stage | WBls:0000003 | ||
| Anatomy_term | WBbt:0004740 | Enriched | ||
| FACS | ||||
| WBbt:0005278 | Enriched | |||
| FACS | ||||
| WBbt:0005396 | Enriched | |||
| FACS | ||||
| WBbt:0005656 | Enriched | |||
| FACS | ||||
| Remark | unc-4::GFP is expressed in 13 embryonic motor neurons. (1) I5 (pharynx), (3) SAB (retrovesicular ganglion), and (9) DA (ventral nerve cord). | |||
| Intensity values were normalized using RMA (Robust Multi-Array Analysis) available through GeneTraffic (Iobion). Comparisons of RMA normalized intensities for unc-4::GFP vs reference cells were statistically analyzed using Significance Analysis of Microarrays software (SAM, Stanford). A two-class unpaired analysis of the data was performed to identify genes that differ by >= 1.7-fold from the wildtype reference at a False Discovery Rate (FDR) of <= 1%. These genes were considered significantly enriched. |
