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WormBase Tree Display for Gene: WBGene00003978

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Name Class

WBGene00003978SMapS_parentSequenceY119D3B
IdentityVersion1
NameCGC_namepes-4Person_evidenceWBPerson266
Sequence_nameY119D3B.17
Molecular_nameY119D3B.17
Y119D3B.17.1
CE32513
Y119D3B.17.2
Other_nameY119D3_447.aCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y119D3B.17Accession_evidenceNDBBX284603
Public_namepes-4
DB_infoDatabaseAceViewgene3C306
WormQTLgeneWBGene00003978
WormFluxgeneWBGene00003978
NDBlocus_tagCELE_Y119D3B.17
PanthergeneCAEEL|WormBase=WBGene00003978|UniProtKB=Q95Y67
familyPTHR10288
NCBIgene175288
RefSeqproteinNM_064950.7
TREEFAMTREEFAM_IDTF318292
TrEMBLUniProtAccQ95Y67
UniProt_GCRPUniProtAccQ95Y67
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:33WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpes
Allele (639)
Legacy_information[C.elegansII] NMK. pes-4:lacZ expressed in nuclei of 3 rectal epithelial cells, from L1 to adult; also dispersed expression in pharynx. Clone UL#26D10. [Young and Hope 1993; UL]
StrainWBStrain00047657
RNASeq_FPKM (74)
GO_annotation00089636
00089637
00089638
00089639
00089640
00089641
00089642
00112106
00112107
Ortholog (46)
ParalogWBGene00007534Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017816Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013347Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00016489Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022738Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00019692Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015557Caenorhabditis elegansFrom_analysisPanther
WBGene00022737Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010908Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionpes-4 encodes a protein that contains two type 1 KH domains, RNA-binding domains that are present in a diverse group of nucleic acid-binding proteins; pes-4 was identified in promoter-trapping screens and by homology, is predicted to function as an RNA-binding protein; however, the precise role of PES-4 in C. elegans development and/or behavior is not yet known; a pes-4 reporter is expressed in three rectal epithelial cells from the L1 larval stage through adulthood and is also seen dispersed throughout the pharynx in all postembryonic stages.Paper_evidenceWBPaper00003306
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be located in cytoplasm and nucleus. Expressed in rectal epithelium. Is an ortholog of several human genes including PCBP1 (poly(rC) binding protein 1); PCBP2 (poly(rC) binding protein 2); and PCBP3 (poly(rC) binding protein 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY119D3B.17
Corresponding_CDS_historyY119D3B.17:wp90
Y119D3B.17:wp216
Corresponding_transcriptY119D3B.17.1
Y119D3B.17.2
Other_sequence (62)
Associated_feature (17)
Experimental_infoRNAi_resultWBRNAi00055512Inferred_automaticallyRNAi_primary
WBRNAi00036632Inferred_automaticallyRNAi_primary
Expr_patternExpr47
Expr1021922
Expr1031898
Expr1159016
Expr2014835
Expr2033070
Microarray_results (18)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044260:1-methylnicotinamide_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045861:ash-2(tm1095)_upregulated
WBPaper00045861:set-2(ok952)_upregulated
WBPaper00045861:wdr-5(ok1417)_upregulated
WBPaper00045974:NSM_enriched_totalRNA_RNAseq
WBPaper00046121:endoderm_unique
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049626:UNC-75_target
WBPaper00050121:mir-60(n4947)_upregulated
WBPaper00050332:skn-1(RNAi)_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051558:fog-2(q71)_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055565:AVK_enriched
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056161:male_enriched_siRNA
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056826:hmc_biased
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057006:DietaryRestriction_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00058958:100mGy-irradiation-72h_upregulated
WBPaper00059027:neuron-synapses_depleted
WBPaper00059117:B.subtilis_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059895:wounding_upregulated
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:AIM
WBPaper00061340:M4_parent
WBPaper00061340:mc1
WBPaper00061340:mc2
WBPaper00061340:mc3
WBPaper00061340:Pharyngeal_intestinal_valve
WBPaper00061340:Pharyngeal_marginal_cell
WBPaper00061340:Pharyngeal_neuron
WBPaper00061340:pm3_pm4_pm5
WBPaper00061340:pm7
WBPaper00061340:RIA
WBPaper00061340:RME
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061479:ubc-9(ne4833)_upregulated
WBPaper00061527:daf-1_17383-epc-1_15051
WBPaper00061651:RIA_enriched
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064071:NHR-49_interacting
WBPaper00064080:miR-2_miRNA_interacting
WBPaper00064163:ZNFX-1_interacting_young-adult
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064871:hypoxia_downregulated_F1
WBPaper00064952:Day5_vs_Day1_downregulated_25C
WBPaper00064952:Day10_vs_Day1_downregulated_20C
WBPaper00064952:Day10_vs_Day1_downregulated_25C
WBPaper00064952:Day10_vs_L4_downregulated_20C
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065373:sek-1(km4)_downregulated_Ref
WBPaper00065841:10_0
WBPaper00065841:55_0
WBPaper00065841:83_0
WBPaper00065841:86_0
WBPaper00065841:111_0
WBPaper00065841:118_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4489_group_5
WBPaper00025032:cluster_12
WBPaper00031003:0hr_muscle_enriched
WBPaper00031003:hlh_1_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00031832:slr-2_regulated
WBPaper00036286:Pattern_G
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00045960:L1-L4-lethargus_upregulated
WBPaper00045960:L4-lethargus_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(122_min)
[cgc5767]:expression_class_SE
[cgc5767]:expression_class_SE_pi(122_min)
Interaction (85)
Map_infoMapIIIPosition-22.5967Error0.003135
PositivePositive_cloneY119D3BInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00001752
WBPaper00038491
WBPaper00043670
WBPaper00055090
WBPaper00058104
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene