WormBase Tree Display for Gene: WBGene00016489
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| WBGene00016489 | SMap | S_parent | Sequence | C36E6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | fubl-3 | Person_evidence | WBPerson260 | |||||
| Sequence_name | C36E6.1 | ||||||||
| Molecular_name | C36E6.1a | ||||||||
| C36E6.1a.1 | |||||||||
| CE30887 | |||||||||
| C36E6.1b | |||||||||
| CE26797 | |||||||||
| C36E6.1b.1 | |||||||||
| Other_name | fubp-3.3 | ||||||||
| fubl-3.3 | |||||||||
| CELE_C36E6.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | fubl-3 | ||||||||
| DB_info | Database | AceView | gene | XS51 | |||||
| WormQTL | gene | WBGene00016489 | |||||||
| WormFlux | gene | WBGene00016489 | |||||||
| NDB | locus_tag | CELE_C36E6.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016489|UniProtKB=Q9BLA0 | |||||||
| family | PTHR10288 | ||||||||
| NCBI | gene | 181773 | |||||||
| RefSeq | protein | NM_001381183.1 | |||||||
| NM_078424.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF313654 | |||||||
| TrEMBL | UniProtAcc | Q9BLA0 | |||||||
| H2KZ81 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9BLA0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 13 Nov 2017 15:54:28 | WBPerson1983 | Name_change | CGC_name | fubp-3.3 | ||||
| 3 | 07 Dec 2017 13:24:47 | WBPerson1983 | Name_change | CGC_name | fubl-3 | ||||
| Other_name | fubl-3.3 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fubl | ||||||||
| Allele (60) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022127 | ||||||||
| 00022128 | |||||||||
| 00022129 | |||||||||
| 00022130 | |||||||||
| 00022131 | |||||||||
| 00092023 | |||||||||
| 00092024 | |||||||||
| 00122094 | |||||||||
| 00122095 | |||||||||
| 00122096 | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00003978 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007534 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010908 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00013347 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015557 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00017816 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019692 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022738 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022737 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | C36E6.1 encodes two proteins by alternative splicing, belonging to an ancient family of single-stranded nucleic acid-binding proteins, that are predicted to regulate gene expression through binding either mRNA or (locally) single-stranded DNA; they are most likely to specifically bind one or more discrete mRNAs and regulate their spatial localization or alternative splicing. | Paper_evidence | WBPaper00012793 | |||||
| WBPaper00012796 | |||||||||
| WBPaper00012860 | |||||||||
| WBPaper00012974 | |||||||||
| WBPaper00013019 | |||||||||
| WBPaper00013169 | |||||||||
| WBPaper00013555 | |||||||||
| WBPaper00013576 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA binding activity. Predicted to be involved in mRNA processing and regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); liver cirrhosis; and malignant astrocytoma. Is an ortholog of human FUBP1 (far upstream element binding protein 1); FUBP3 (far upstream element binding protein 3); and KHSRP (KH-type splicing regulatory protein). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (13) | ||||||||
| Molecular_info | Corresponding_CDS | C36E6.1a | |||||||
| C36E6.1b | |||||||||
| Corresponding_transcript | C36E6.1a.1 | ||||||||
| C36E6.1b.1 | |||||||||
| Other_sequence | ES566178.1 | ||||||||
| OOC00556_1 | |||||||||
| ES565172.1 | |||||||||
| TS01279 | |||||||||
| Tcol_isotig06085 | |||||||||
| Tcir_isotig26497 | |||||||||
| Tcol_isotig06086 | |||||||||
| CR10658 | |||||||||
| CRC03463_1 | |||||||||
| CJC17977_1 | |||||||||
| Associated_feature | WBsf648878 | ||||||||
| WBsf662396 | |||||||||
| WBsf1008912 | |||||||||
| WBsf1008913 | |||||||||
| WBsf1025025 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00042071 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042070 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015396 | ||||||||
| Expr1037068 | |||||||||
| Expr1146069 | |||||||||
| Expr2001480 | |||||||||
| Expr2019701 | |||||||||
| Drives_construct | WBCnstr00028025 | ||||||||
| Construct_product | WBCnstr00028025 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction (17) | |||||||||
| Map_info | Positive | Positive_clone | C36E6 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | 24.0991 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
