WormBase Tree Display for Gene: WBGene00017816
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WBGene00017816 | SMap | S_parent | Sequence | F26B1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | hrpk-1 | Person_evidence | WBPerson2506 | |||||
Sequence_name | F26B1.2 | ||||||||
Molecular_name (19) | |||||||||
Other_name | CELE_F26B1.2 | Accession_evidence | NDB | BX284601 | |||||
Public_name | hrpk-1 | ||||||||
DB_info | Database | AceView | gene | 1G895 | |||||
WormQTL | gene | WBGene00017816 | |||||||
WormFlux | gene | WBGene00017816 | |||||||
NDB | locus_tag | CELE_F26B1.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00017816|UniProtKB=P91277 | |||||||
family | PTHR10288 | ||||||||
NCBI | gene | 172330 | |||||||
RefSeq | protein | NM_001392429.1 | |||||||
NM_001392433.1 | |||||||||
NM_001392432.1 | |||||||||
NM_001392431.1 | |||||||||
NM_170880.6 | |||||||||
SwissProt | UniProtAcc | P91277 | |||||||
TREEFAM | TREEFAM_ID | TF316335 | |||||||
UniProt_GCRP | UniProtAcc | P91277 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 04 Jan 2016 15:29:00 | WBPerson2970 | Name_change | CGC_name | hrpk-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | hrpk | ||||||||
Allele (36) | |||||||||
Possibly_affected_by | WBVar02152928 | ||||||||
Strain | WBStrain00037915 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (19) | |||||||||
Ortholog (46) | |||||||||
Paralog | WBGene00003978 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00007534 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00010908 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00013347 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00015557 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00016489 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00019692 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00022738 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00022737 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable mRNA binding activity. Involved in DNA damage response and embryo development. Predicted to be located in cytoplasm and nucleus. Expressed in several structures, including hypodermal cell; intestinal cell; muscle cell; neurons; and oocyte. Human ortholog(s) of this gene implicated in Raynaud disease; colorectal cancer; and prostate cancer. Is an ortholog of human HNRNPK (heterogeneous nuclear ribonucleoprotein K). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5044) | ||||
DOID:10283 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5044) | ||||||
DOID:10300 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5044) | ||||||
Molecular_info | Corresponding_CDS | F26B1.2a | |||||||
F26B1.2b | |||||||||
F26B1.2c | |||||||||
F26B1.2d | |||||||||
F26B1.2e | |||||||||
Corresponding_CDS_history | F26B1.2b:wp90 | ||||||||
Corresponding_transcript | F26B1.2a.1 | ||||||||
F26B1.2b.1 | |||||||||
F26B1.2b.2 | |||||||||
F26B1.2b.3 | |||||||||
F26B1.2b.4 | |||||||||
F26B1.2c.1 | |||||||||
F26B1.2d.1 | |||||||||
F26B1.2d.2 | |||||||||
F26B1.2e.1 | |||||||||
Other_sequence (71) | |||||||||
Associated_feature | WBsf643356 | ||||||||
WBsf983891 | |||||||||
WBsf983892 | |||||||||
WBsf217794 | |||||||||
WBsf217795 | |||||||||
WBsf217796 | |||||||||
WBsf217797 | |||||||||
Experimental_info | RNAi_result | WBRNAi00115203 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00077903 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00111647 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00045597 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00116469 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00031429 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00003476 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00007753 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr14889 | ||||||||
Expr14890 | |||||||||
Expr14891 | |||||||||
Expr14892 | |||||||||
Expr1011487 | |||||||||
Expr1037656 | |||||||||
Expr1149507 | |||||||||
Expr2012603 | |||||||||
Expr2030839 | |||||||||
Drives_construct | WBCnstr00026993 | ||||||||
Construct_product | WBCnstr00026993 | ||||||||
Regulate_expr_cluster | WBPaper00058673:hrpk-1(tm5522)_downregulated_miRNA_L4 | ||||||||
WBPaper00058673:hrpk-1(tm5522)_upregulated_miRNA_L4 | |||||||||
WBPaper00058673:hrpk-1(zen17)_downregulated_miRNA_embryo | |||||||||
WBPaper00058673:hrpk-1(zen17)_downregulated_miRNA_L4 | |||||||||
WBPaper00058673:hrpk-1(zen17)_upregulated_miRNA_embryo | |||||||||
WBPaper00058673:hrpk-1(zen17)_upregulated_miRNA_L4 | |||||||||
Antibody | WBAntibody00002880 | ||||||||
Microarray_results (52) | |||||||||
Expression_cluster (187) | |||||||||
SAGE_tag | SAGE:ggcgttgaat | Strand | Antisense | ||||||
SAGE:aagcgagagcacgataa | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:tccaagtccc | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:gccttcggac | Strand | Antisense | |||||||
SAGE:aatgcgtatt | Strand | Antisense | |||||||
Interaction (205) | |||||||||
Map_info | Map | I | Position | 0.985507 | |||||
Positive | Positive_clone | F26B1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (12) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |