WormBase Tree Display for Gene: WBGene00003978
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| WBGene00003978 | SMap | S_parent | Sequence | Y119D3B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pes-4 | Person_evidence | WBPerson266 | |||||
| Sequence_name | Y119D3B.17 | ||||||||
| Molecular_name | Y119D3B.17 | ||||||||
| Y119D3B.17.1 | |||||||||
| CE32513 | |||||||||
| Y119D3B.17.2 | |||||||||
| Other_name | Y119D3_447.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y119D3B.17 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | pes-4 | ||||||||
| DB_info | Database | AceView | gene | 3C306 | |||||
| WormQTL | gene | WBGene00003978 | |||||||
| WormFlux | gene | WBGene00003978 | |||||||
| NDB | locus_tag | CELE_Y119D3B.17 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003978|UniProtKB=Q95Y67 | |||||||
| family | PTHR10288 | ||||||||
| NCBI | gene | 175288 | |||||||
| RefSeq | protein | NM_064950.7 | |||||||
| TREEFAM | TREEFAM_ID | TF318292 | |||||||
| TrEMBL | UniProtAcc | Q95Y67 | |||||||
| UniProt_GCRP | UniProtAcc | Q95Y67 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pes | ||||||||
| Allele (639) | |||||||||
| Legacy_information | [C.elegansII] NMK. pes-4:lacZ expressed in nuclei of 3 rectal epithelial cells, from L1 to adult; also dispersed expression in pharynx. Clone UL#26D10. [Young and Hope 1993; UL] | ||||||||
| Strain | WBStrain00047657 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089636 | ||||||||
| 00089637 | |||||||||
| 00089638 | |||||||||
| 00089639 | |||||||||
| 00089640 | |||||||||
| 00089641 | |||||||||
| 00089642 | |||||||||
| 00112106 | |||||||||
| 00112107 | |||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00007534 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00017816 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00013347 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016489 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022738 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019692 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015557 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022737 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010908 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | pes-4 encodes a protein that contains two type 1 KH domains, RNA-binding domains that are present in a diverse group of nucleic acid-binding proteins; pes-4 was identified in promoter-trapping screens and by homology, is predicted to function as an RNA-binding protein; however, the precise role of PES-4 in C. elegans development and/or behavior is not yet known; a pes-4 reporter is expressed in three rectal epithelial cells from the L1 larval stage through adulthood and is also seen dispersed throughout the pharynx in all postembryonic stages. | Paper_evidence | WBPaper00003306 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be located in cytoplasm and nucleus. Expressed in rectal epithelium. Is an ortholog of several human genes including PCBP1 (poly(rC) binding protein 1); PCBP2 (poly(rC) binding protein 2); and PCBP3 (poly(rC) binding protein 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y119D3B.17 | |||||||
| Corresponding_CDS_history | Y119D3B.17:wp90 | ||||||||
| Y119D3B.17:wp216 | |||||||||
| Corresponding_transcript | Y119D3B.17.1 | ||||||||
| Y119D3B.17.2 | |||||||||
| Other_sequence (62) | |||||||||
| Associated_feature (17) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055512 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036632 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr47 | ||||||||
| Expr1021922 | |||||||||
| Expr1031898 | |||||||||
| Expr1159016 | |||||||||
| Expr2014835 | |||||||||
| Expr2033070 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (155) | |||||||||
| Interaction (85) | |||||||||
| Map_info | Map | III | Position | -22.5967 | Error | 0.003135 | |||
| Positive | Positive_clone | Y119D3B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001752 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00043670 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058104 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
