WormBase Tree Display for Gene: WBGene00003978

WBGene00003978 SMap: S_parent: Sequence: Y119D3B
  Identity: Version: 1
    Name: CGC_name: pes-4 Person_evidence: WBPerson266
      Sequence_name: Y119D3B.17
      Molecular_name: Y119D3B.17
        Y119D3B.17.1
        CE32513
        Y119D3B.17.2
      Other_name: Y119D3_447.a Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y119D3B.17 Accession_evidence: NDB BX284603
      Public_name: pes-4
    DB_info: Database: AceView gene 3C306
        WormQTL gene WBGene00003978
        WormFlux gene WBGene00003978
        NDB locus_tag CELE_Y119D3B.17
        Panther gene CAEEL|WormBase=WBGene00003978|UniProtKB=Q95Y67
          family PTHR10288
        NCBI gene 175288
        RefSeq protein NM_064950.7
        TREEFAM TREEFAM_ID TF318292
        TrEMBL UniProtAcc Q95Y67
        UniProt_GCRP UniProtAcc Q95Y67
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pes
    Allele (639)
    Legacy_information: [C.elegansII] NMK. pes-4:lacZ expressed in nuclei of 3 rectal epithelial cells, from L1 to adult; also dispersed expression in pharynx. Clone UL#26D10. [Young and Hope 1993; UL]
    Strain: WBStrain00047657
    RNASeq_FPKM (74)
    GO_annotation: 00089636
      00089637
      00089638
      00089639
      00089640
      00089641
      00089642
      00112106
      00112107
    Ortholog: WBGene00071288 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00035843 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00153218 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00125816 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00091867 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00233267 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5908 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g402 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g12996 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12927 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22433 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20883 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g10575 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7147 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g20407 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5298 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00317.g9086 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_12206.g23621 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_15155.g24943 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-pes-4 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g16788 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00683.g14377 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_14572 Caenorhabditis latens From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04730 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g488 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30315800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g6901 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00244322 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00260796 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285649 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000437 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0262737 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-563 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-2122 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-050522-157 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:8647 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:8648 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:8651 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:8652 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:108202 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1345635 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1890471 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1890470 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1307430 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1309626 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1307910 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00007534 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00017816 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00013347 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00016489 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00022738 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019692 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00015557 Caenorhabditis elegans From_analysis: Panther
      WBGene00022737 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00010908 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: pes-4 encodes a protein that contains two type 1 KH domains, RNA-binding domains that are present in a diverse group of nucleic acid-binding proteins; pes-4 was identified in promoter-trapping screens and by homology, is predicted to function as an RNA-binding protein; however, the precise role of PES-4 in C. elegans development and/or behavior is not yet known; a pes-4 reporter is expressed in three rectal epithelial cells from the L1 larval stage through adulthood and is also seen dispersed throughout the pharynx in all postembryonic stages. Paper_evidence: WBPaper00003306
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be located in cytoplasm and nucleus. Expressed in rectal epithelium. Is an ortholog of several human genes including PCBP1 (poly(rC) binding protein 1); PCBP2 (poly(rC) binding protein 2); and PCBP3 (poly(rC) binding protein 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y119D3B.17
    Corresponding_CDS_history: Y119D3B.17:wp90
      Y119D3B.17:wp216
    Corresponding_transcript: Y119D3B.17.1
      Y119D3B.17.2
    Other_sequence (62)
    Associated_feature (17)
  Experimental_info: RNAi_result: WBRNAi00055512 Inferred_automatically: RNAi_primary
      WBRNAi00036632 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr47
      Expr1021922
      Expr1031898
      Expr1159016
      Expr2014835
      Expr2033070
    Microarray_results (18)
    Expression_cluster (155)
    Interaction (85)
  Map_info: Map: III Position: -22.5967 Error: 0.003135
    Positive: Positive_clone: Y119D3B Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00001752
    WBPaper00038491
    WBPaper00043670
    WBPaper00055090
    WBPaper00058104
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene