WormBase Tree Display for Gene: WBGene00003978
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| WBGene00003978 | SMap | S_parent | Sequence | Y119D3B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pes-4 | Person_evidence | WBPerson266 | |||||
| Sequence_name | Y119D3B.17 | ||||||||
| Molecular_name | Y119D3B.17 | ||||||||
| Y119D3B.17.1 | |||||||||
| CE32513 | |||||||||
| Y119D3B.17.2 | |||||||||
| Other_name | Y119D3_447.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y119D3B.17 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | pes-4 | ||||||||
| DB_info | Database | AceView | gene | 3C306 | |||||
| WormQTL | gene | WBGene00003978 | |||||||
| WormFlux | gene | WBGene00003978 | |||||||
| NDB | locus_tag | CELE_Y119D3B.17 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003978|UniProtKB=Q95Y67 | |||||||
| family | PTHR10288 | ||||||||
| NCBI | gene | 175288 | |||||||
| RefSeq | protein | NM_064950.7 | |||||||
| TREEFAM | TREEFAM_ID | TF318292 | |||||||
| TrEMBL | UniProtAcc | Q95Y67 | |||||||
| UniProt_GCRP | UniProtAcc | Q95Y67 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pes | ||||||||
| Allele (639) | |||||||||
| Legacy_information | [C.elegansII] NMK. pes-4:lacZ expressed in nuclei of 3 rectal epithelial cells, from L1 to adult; also dispersed expression in pharynx. Clone UL#26D10. [Young and Hope 1993; UL] | ||||||||
| Strain | WBStrain00047657 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089636 | ||||||||
| 00089637 | |||||||||
| 00089638 | |||||||||
| 00089639 | |||||||||
| 00089640 | |||||||||
| 00089641 | |||||||||
| 00089642 | |||||||||
| 00112106 | |||||||||
| 00112107 | |||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00007534 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00017816 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00013347 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016489 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022738 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019692 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015557 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022737 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010908 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description (2) | |||||||||
| Molecular_info | Corresponding_CDS | Y119D3B.17 | |||||||
| Corresponding_CDS_history | Y119D3B.17:wp90 | ||||||||
| Y119D3B.17:wp216 | |||||||||
| Corresponding_transcript | Y119D3B.17.1 | ||||||||
| Y119D3B.17.2 | |||||||||
| Other_sequence (62) | |||||||||
| Associated_feature (17) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055512 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036632 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr47 | ||||||||
| Expr1021922 | |||||||||
| Expr1031898 | |||||||||
| Expr1159016 | |||||||||
| Expr2014835 | |||||||||
| Expr2033070 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (155) | |||||||||
| Interaction (85) | |||||||||
| Map_info | Map | III | Position | -22.5967 | Error | 0.003135 | |||
| Positive | Positive_clone | Y119D3B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001752 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00043670 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058104 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
