WormBase Tree Display for Gene: WBGene00003096
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WBGene00003096 | SMap | S_parent | Sequence | C02A12 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | lys | |||||
Allele (30) | ||||||
Strain | WBStrain00031984 | |||||
WBStrain00031985 | ||||||
WBStrain00004711 | ||||||
WBStrain00004740 | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation (14) | ||||||
Ortholog (20) | ||||||
Paralog | WBGene00003090 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||
Panther | ||||||
WormBase-Compara | ||||||
WBGene00003091 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||
Panther | ||||||
WormBase-Compara | ||||||
WBGene00003092 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | ||||||
WBGene00003093 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | ||||||
WBGene00003094 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | ||||||
WBGene00003095 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | ||||||
WBGene00003097 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||
Panther | ||||||
WormBase-Compara | ||||||
WBGene00003098 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | ||||||
WBGene00003099 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | ||||||
Structured_description | Concise_description | lys-7 encodes an enzyme homologous to an antimicrobial lysozyme encoded by the LYS4 gene of the protozoan parasite Entamoeba histolytica; LYS-7 functions in the innate immune response as an antimicrobial enzyme that, by homology, hydrolyzes the 1,4-beta-linkages between N-acetyl-D-glucosamine and N-acetylmuramic acid in peptidoglycan heteropolymers of prokaryotic cell walls; loss of lys-7 activity results in enhanced susceptibility to P. aeruginosa PA14, renders worms susceptible to Cryptococcus neoformans killing, but enhances tolerance to the enteric bacteria Salmonella typhimurium; lys-7 expression is significantly upregulated in response to infection with the Gram-negative bacterium Serratia marcescens; constitutive expression of lys-7 mRNA is detected in the intestine and the intestinal valve cells. | Paper_evidence | WBPaper00004651 | ||
WBPaper00005382 | ||||||
WBPaper00005569 | ||||||
WBPaper00005654 | ||||||
WBPaper00041211 | ||||||
WBPaper00038223 | ||||||
WBPaper00032276 | ||||||
Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 19 Feb 2014 00:00:00 | |||||
Automated_description | Involved in defense response to other organism. Expressed in head neurons; intestine; and rectal gland cell. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | C02A12.4 | ||||
Corresponding_transcript | C02A12.4.1 | |||||
Other_sequence (84) | ||||||
Associated_feature | WBsf019148 | |||||
WBsf019149 | ||||||
WBsf652532 | ||||||
WBsf233493 | ||||||
WBsf233494 | ||||||
Experimental_info | RNAi_result (21) | |||||
Expr_pattern | Expr1973 | |||||
Expr4716 | ||||||
Expr10716 | ||||||
Expr1018008 | ||||||
Expr1143497 | ||||||
Expr2013318 | ||||||
Expr2031549 | ||||||
Drives_construct | WBCnstr00009965 | |||||
WBCnstr00012193 | ||||||
WBCnstr00015892 | ||||||
WBCnstr00017492 | ||||||
WBCnstr00036232 | ||||||
WBCnstr00041439 | ||||||
Construct_product | WBCnstr00009965 | |||||
WBCnstr00012193 | ||||||
WBCnstr00036232 | ||||||
Microarray_results (18) | ||||||
Expression_cluster (437) | ||||||
Interaction (200) | ||||||
WBProcess | WBbiopr:00000008 | |||||
WBbiopr:00000039 | ||||||
Map_info (4) | ||||||
Reference (65) | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |