WormBase Tree Display for Gene: WBGene00003096
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WBGene00003096 | SMap | S_parent | Sequence | C02A12 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | lys | ||||||
Allele (30) | |||||||
Strain | WBStrain00031984 | ||||||
WBStrain00031985 | |||||||
WBStrain00004711 | |||||||
WBStrain00004740 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (14) | |||||||
Ortholog (20) | |||||||
Paralog | WBGene00003090 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00003091 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00003092 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00003093 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00003094 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00003095 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00003097 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00003098 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00003099 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | lys-7 encodes an enzyme homologous to an antimicrobial lysozyme encoded by the LYS4 gene of the protozoan parasite Entamoeba histolytica; LYS-7 functions in the innate immune response as an antimicrobial enzyme that, by homology, hydrolyzes the 1,4-beta-linkages between N-acetyl-D-glucosamine and N-acetylmuramic acid in peptidoglycan heteropolymers of prokaryotic cell walls; loss of lys-7 activity results in enhanced susceptibility to P. aeruginosa PA14, renders worms susceptible to Cryptococcus neoformans killing, but enhances tolerance to the enteric bacteria Salmonella typhimurium; lys-7 expression is significantly upregulated in response to infection with the Gram-negative bacterium Serratia marcescens; constitutive expression of lys-7 mRNA is detected in the intestine and the intestinal valve cells. | Paper_evidence | WBPaper00004651 | |||
WBPaper00005382 | |||||||
WBPaper00005569 | |||||||
WBPaper00005654 | |||||||
WBPaper00041211 | |||||||
WBPaper00038223 | |||||||
WBPaper00032276 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 19 Feb 2014 00:00:00 | ||||||
Automated_description | Involved in defense response to other organism. Expressed in head neurons; intestine; and rectal gland cell. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C02A12.4 | |||||
Corresponding_transcript | C02A12.4.1 | ||||||
Other_sequence (84) | |||||||
Associated_feature | WBsf019148 | ||||||
WBsf019149 | |||||||
WBsf652532 | |||||||
WBsf233493 | |||||||
WBsf233494 | |||||||
Experimental_info | RNAi_result (21) | ||||||
Expr_pattern | Expr1973 | ||||||
Expr4716 | |||||||
Expr10716 | |||||||
Expr1018008 | |||||||
Expr1143497 | |||||||
Expr2013318 | |||||||
Expr2031549 | |||||||
Drives_construct | WBCnstr00009965 | ||||||
WBCnstr00012193 | |||||||
WBCnstr00015892 | |||||||
WBCnstr00017492 | |||||||
WBCnstr00036232 | |||||||
WBCnstr00041439 | |||||||
Construct_product | WBCnstr00009965 | ||||||
WBCnstr00012193 | |||||||
WBCnstr00036232 | |||||||
Microarray_results (18) | |||||||
Expression_cluster (437) | |||||||
Interaction (200) | |||||||
WBProcess | WBbiopr:00000008 | ||||||
WBbiopr:00000039 | |||||||
Map_info | Map | V | Position | -10.8998 | Error | 0.024633 | |
Positive | Positive_clone | C02A12 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4881 | |||||
4924 | |||||||
5423 | |||||||
Pos_neg_data | 10776 | ||||||
Pseudo_map_position | |||||||
Reference (65) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |