WormBase Tree Display for Gene: WBGene00001253

WBGene00001253 SMap: S_parent: Sequence: F52C12
  Identity: Version: 1
    Name: CGC_name: elt-6 Person_evidence: WBPerson71
      Sequence_name: F52C12.5
      Molecular_name: F52C12.5
        F52C12.5.1
        CE31536
      Other_name: CELE_F52C12.5 Accession_evidence: NDB BX284604
      Public_name: elt-6
    DB_info: Database: AceView gene 4C685
        WormQTL gene WBGene00001253
        SignaLink protein WBGene00001253
        WormFlux gene WBGene00001253
        NDB locus_tag CELE_F52C12.5
        Panther gene CAEEL|WormBase=WBGene00001253|UniProtKB=G5EGN3
          family PTHR10071
        NCBI gene 176993
        RefSeq protein NM_067743.8
        SwissProt UniProtAcc G5EGN3
        UniProt_GCRP UniProtAcc G5EGN3
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:23 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: elt
    Allele (105)
    Strain: WBStrain00036671
      WBStrain00036729
      WBStrain00052004
    RNASeq_FPKM (74)
    GO_annotation (15)
    Contained_in_operon: CEOP4050
    Ortholog (31)
    Paralog: WBGene00001186 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001249 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001250 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001251 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001252 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00015981 Caenorhabditis elegans From_analysis: Panther
      WBGene00001310 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001311 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Concise_description: elt-6 encodes a GATA transcription factor; ELT-6 is required for proper specification of vulval and seam cell fates, as well as for cell non-autonomous regulation of tail tip morphogenesis; ELT-6 localizes to the nucleus. Paper_evidence: WBPaper00005609
            WBPaper00038232
            WBPaper00004833
          Curator_confirmed: WBPerson1843
          Date_last_updated: 02 May 2013 00:00:00
      Automated_description: Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate commitment; negative regulation of transcription by RNA polymerase II; and positive regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in several structures, including ABarpaapap; ABarpaappa; ABarpaappp; ABprpppppaa; and body wall muscle cell from MS lineage. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F52C12.5
    Corresponding_CDS_history: F52C12.5:wp82
    Corresponding_transcript: F52C12.5.1
    Other_sequence (11)
    Associated_feature: WBsf019098
      WBsf038793
      WBsf038794
      WBsf645826
      WBsf659958
      WBsf978559
      WBsf995585
      WBsf227984
      WBsf227985
      WBsf227986
    Transcription_factor: WBTranscriptionFactor000591
  Experimental_info: RNAi_result (25)
    Expr_pattern (11)
    Drives_construct: WBCnstr00005053
      WBCnstr00009223
      WBCnstr00010361
      WBCnstr00015232
      WBCnstr00015233
      WBCnstr00016504
    Construct_product: WBCnstr00006753
      WBCnstr00008174
    Antibody: WBAntibody00000398
    Microarray_results (22)
    Expression_cluster (124)
    SAGE_tag: SAGE:gctaacggtggagccaa Strand: Sense
        Unambiguously_mapped
      SAGE:ctcaacagcaggcgaga Strand: Sense
        Unambiguously_mapped
      SAGE:ctcaacagca Strand: Sense
        Unambiguously_mapped
      SAGE:ttcctttaataaatatt Strand: Sense
        Unambiguously_mapped
      SAGE:tgaaccggccgatgtgt Strand: Antisense
      SAGE:gctaacggtg Strand: Sense
        Unambiguously_mapped
      SAGE:ctcggtaggc Strand: Antisense
      SAGE:gatatgcacacaaataa Strand: Antisense
      SAGE:gatatgcaca Strand: Antisense
      SAGE:ttcctttaat Strand: Sense
        Unambiguously_mapped
    Interaction (145)
    WBProcess: WBbiopr:00000001
  Map_info: Map: IV Position: -12.9654 Error: 0.187283
    Positive: Positive_clone: F52C12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (41)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene