WormBase Tree Display for Gene: WBGene00001311
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| WBGene00001311 | SMap | S_parent | Sequence | F58E10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | end-3 | Person_evidence | WBPerson539 | |||||
| Sequence_name | F58E10.5 | ||||||||
| Molecular_name | F58E10.5 | ||||||||
| F58E10.5.1 | |||||||||
| CE18787 | |||||||||
| Other_name | CELE_F58E10.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | end-3 | ||||||||
| DB_info | Database | AceView | gene | 5O495 | |||||
| WormQTL | gene | WBGene00001311 | |||||||
| SignaLink | protein | WBGene00001311 | |||||||
| WormFlux | gene | WBGene00001311 | |||||||
| NDB | locus_tag | CELE_F58E10.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001311|UniProtKB=Q9XUW7 | |||||||
| family | PTHR10071 | ||||||||
| NCBI | gene | 191631 | |||||||
| RefSeq | protein | NM_074079.3 | |||||||
| TrEMBL | UniProtAcc | Q9XUW7 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XUW7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | end | ||||||||
| Allele (22) | |||||||||
| Strain | WBStrain00022758 | ||||||||
| WBStrain00022759 | |||||||||
| WBStrain00022761 | |||||||||
| WBStrain00032030 | |||||||||
| WBStrain00051975 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (23) | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00001186 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00001249 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00001250 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00001251 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00001252 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00001253 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00001310 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00015981 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | end-3 encodes a GATA-type transcription factor paralogous to end-1; during early embryonic development, end-3 functions redundnatly with end-1 to specify endodermal fate; like end-1, ectopic expression of end-3 is sufficient to specify endodermal fate; end-3 is expressed in the early E (endoderm) lineage; end-3 expression is downstream of med-1, a mesendodermal specification gene. | Paper_evidence | WBPaper00004636 | |||||
| WBPaper00005295 | |||||||||
| WBPaper00005341 | |||||||||
| WBPaper00026622 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 26 Jan 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in endodermal cell fate specification and mesodermal cell fate specification. Located in nucleus. Expressed in E; E lineage cell; Ea; Ep; and intestine. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F58E10.5 | |||||||
| Corresponding_transcript | F58E10.5.1 | ||||||||
| Associated_feature | WBsf647507 | ||||||||
| WBsf662064 | |||||||||
| WBsf978293 | |||||||||
| WBsf232858 | |||||||||
| Transcription_factor | WBTranscriptionFactor000711 | ||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern (14) | |||||||||
| Drives_construct | WBCnstr00004612 | ||||||||
| WBCnstr00005054 | |||||||||
| WBCnstr00005055 | |||||||||
| WBCnstr00005056 | |||||||||
| WBCnstr00006158 | |||||||||
| WBCnstr00007189 | |||||||||
| WBCnstr00011436 | |||||||||
| WBCnstr00015236 | |||||||||
| WBCnstr00019641 | |||||||||
| WBCnstr00037000 | |||||||||
| Construct_product (12) | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (83) | |||||||||
| Interaction (121) | |||||||||
| Map_info | Map | V | Position | 5.98767 | Error | 0.022085 | |||
| Positive | Positive_clone | F58E10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4149 | |||||||
| 4288 | |||||||||
| 4500 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (103) | |||||||||
| Picture | WBPicture0000013084 | ||||||||
| Remark | Sequence data from Morris Maduro | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
