WormBase Tree Display for Gene: WBGene00001251
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| WBGene00001251 | SMap | S_parent | Sequence | K02B9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | elt-3 | Person_evidence | WBPerson71 | |||||
| Sequence_name | K02B9.4 | ||||||||
| Molecular_name (14) | |||||||||
| Other_name | CELE_K02B9.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | elt-3 | ||||||||
| DB_info | Database | AceView | gene | XO559 | |||||
| WormQTL | gene | WBGene00001251 | |||||||
| WormFlux | gene | WBGene00001251 | |||||||
| NDB | locus_tag | CELE_K02B9.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001251|UniProtKB=B7WN96 | |||||||
| family | PTHR10071 | ||||||||
| NCBI | gene | 181503 | |||||||
| RefSeq | protein | NM_001392881.1 | |||||||
| NM_001381138.1 | |||||||||
| NM_001270308.4 | |||||||||
| NM_001270307.4 | |||||||||
| SwissProt | UniProtAcc | B7WN96 | |||||||
| UniProt_GCRP | UniProtAcc | B7WN96 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | elt | ||||||||
| Allele (114) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes GATA family protein. [BL; CGC] | ||||||||
| Strain | WBStrain00022239 | ||||||||
| WBStrain00034019 | |||||||||
| WBStrain00034021 | |||||||||
| WBStrain00035539 | |||||||||
| WBStrain00035540 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (48) | |||||||||
| Ortholog (26) | |||||||||
| Paralog | WBGene00001186 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001249 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001250 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015981 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00001310 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001311 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00001253 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001252 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | elt-3 gene encodes a GATA transcription factor; during embryogenesis, ELT-3 appears to act downstream of ELT-1, also a GATA transcription factor, in a redundant pathway controlling hypodermal cell differentiation; ELT-3 is also required for positive regulation of transcription of nlp-29, which encodes an antimicrobial peptide, in response to fungal infection and gpdh-1 in response to salt stress; in addition, ELT-3 may also play a role in regulating adult lifespan; ELT-3 is expressed in all of the major hypodermal cells except the lateral seam cells and localizes to the nucleus; elt-3 expression in the hypodermis is positively regulated by ELT-1 and negatively regulated by ELT-5 and ELT-6. | Paper_evidence | WBPaper00004593 | |||||
| WBPaper00032031 | |||||||||
| WBPaper00003515 | |||||||||
| WBPaper00032062 | |||||||||
| WBPaper00040311 | |||||||||
| WBPaper00004833 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 07 Aug 2012 00:00:00 | ||||||||
| Automated_description | Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity and RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in several processes, including determination of adult lifespan; lysosome organization; and positive regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in several structures, including Caaaaa; Caaaap; hermaphrodite distal tip cell; hypodermal cell; and rectum. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K02B9.4a | |||||||
| K02B9.4b | |||||||||
| K02B9.4c | |||||||||
| K02B9.4d | |||||||||
| Corresponding_transcript | K02B9.4a.1 | ||||||||
| K02B9.4a.2 | |||||||||
| K02B9.4a.3 | |||||||||
| K02B9.4b.1 | |||||||||
| K02B9.4c.1 | |||||||||
| K02B9.4d.1 | |||||||||
| Other_sequence | AF146517 | ||||||||
| Tcir_isotig06802 | |||||||||
| HBC02455_1 | |||||||||
| FE913867.1 | |||||||||
| DVC01349_1 | |||||||||
| Tcol_isotig13564 | |||||||||
| EV851227.1 | |||||||||
| Dviv_isotig24245 | |||||||||
| ES410057.1 | |||||||||
| Associated_feature (19) | |||||||||
| Gene_product_binds (5934) | |||||||||
| Transcription_factor | WBTranscriptionFactor000005 | ||||||||
| Experimental_info | RNAi_result (49) | ||||||||
| Expr_pattern (13) | |||||||||
| Drives_construct (19) | |||||||||
| Construct_product | WBCnstr00000201 | ||||||||
| WBCnstr00000202 | |||||||||
| WBCnstr00000203 | |||||||||
| WBCnstr00000276 | |||||||||
| WBCnstr00007746 | |||||||||
| WBCnstr00012413 | |||||||||
| WBCnstr00021786 | |||||||||
| WBCnstr00037009 | |||||||||
| Antibody | WBAntibody00000221 | ||||||||
| WBAntibody00001719 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (138) | |||||||||
| Interaction (70) | |||||||||
| Product_binds_matrix | WBPmat00005566 | ||||||||
| WBPmat00005567 | |||||||||
| WBProcess | WBbiopr:00000001 | ||||||||
| WBbiopr:00000039 | |||||||||
| Map_info | Map | X | Position | 15.5355 | Error | 0.088614 | |||
| Positive | Positive_clone | E01C9 | Person_evidence | WBPerson202 | |||||
| K02B9 | Person_evidence | WBPerson202 | |||||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Y38B8 | Person_evidence | WBPerson202 | |||||||
| Y45E11 | Person_evidence | WBPerson202 | |||||||
| Y46E3 | Person_evidence | WBPerson202 | |||||||
| Mapping_data | Multi_point | 4153 | |||||||
| 4285 | |||||||||
| 4961 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (89) | |||||||||
| Remark | [Gilleard J] member of the GATA transcription factor family in C.elegans. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
