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WormBase Tree Display for Gene: WBGene00001253

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Name Class

WBGene00001253SMapS_parentSequenceF52C12
IdentityVersion1
NameCGC_nameelt-6Person_evidenceWBPerson71
Sequence_nameF52C12.5
Molecular_nameF52C12.5
F52C12.5.1
CE31536
Other_nameCELE_F52C12.5Accession_evidenceNDBBX284604
Public_nameelt-6
DB_infoDatabaseAceViewgene4C685
WormQTLgeneWBGene00001253
SignaLinkproteinWBGene00001253
WormFluxgeneWBGene00001253
NDBlocus_tagCELE_F52C12.5
PanthergeneCAEEL|WormBase=WBGene00001253|UniProtKB=G5EGN3
familyPTHR10071
NCBIgene176993
RefSeqproteinNM_067743.8
SwissProtUniProtAccG5EGN3
UniProt_GCRPUniProtAccG5EGN3
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:23WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classelt
Allele (105)
StrainWBStrain00036671
WBStrain00036729
WBStrain00052004
RNASeq_FPKM (74)
GO_annotation (15)
Contained_in_operonCEOP4050
OrthologWBGene00064555Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00034303Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00130353Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00224515Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g11054Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2278Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g14021Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g525Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g21703Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7338Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g17389Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g818Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g17046Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g19026Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g23963Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-elt-6Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10686Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00214.g7198Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_15657Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_016307Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02762Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g15697Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40041600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g9744Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241875Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00091094Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00256447Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000001873Saccharomyces cerevisiaeFrom_analysisOrthoInspector
Panther
SGD:S000003646Saccharomyces cerevisiaeFrom_analysisOrthoInspector
Panther
SGD:S000001742Saccharomyces cerevisiaeFrom_analysisOrthoInspector
SonicParanoid
FB:FBgn0032223Drosophila melanogasterFrom_analysisOrthoInspector
Panther
ParalogWBGene00001186Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001249Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001250Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001251Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001252Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015981Caenorhabditis elegansFrom_analysisPanther
WBGene00001310Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001311Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionConcise_descriptionelt-6 encodes a GATA transcription factor; ELT-6 is required for proper specification of vulval and seam cell fates, as well as for cell non-autonomous regulation of tail tip morphogenesis; ELT-6 localizes to the nucleus.Paper_evidenceWBPaper00005609
WBPaper00038232
WBPaper00004833
Curator_confirmedWBPerson1843
Date_last_updated02 May 2013 00:00:00
Automated_descriptionEnables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate commitment; negative regulation of transcription by RNA polymerase II; and positive regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in several structures, including ABarpaapap; ABarpaappa; ABarpaappp; ABprpppppaa; and body wall muscle cell from MS lineage.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF52C12.5
Corresponding_CDS_historyF52C12.5:wp82
Corresponding_transcriptF52C12.5.1
Other_sequence (11)
Associated_featureWBsf019098
WBsf038793
WBsf038794
WBsf645826
WBsf659958
WBsf978559
WBsf995585
WBsf227984
WBsf227985
WBsf227986
Transcription_factorWBTranscriptionFactor000591
Experimental_infoRNAi_result (25)
Expr_pattern (11)
Drives_constructWBCnstr00005053
WBCnstr00009223
WBCnstr00010361
WBCnstr00015232
WBCnstr00015233
WBCnstr00016504
Construct_productWBCnstr00006753
WBCnstr00008174
AntibodyWBAntibody00000398
Microarray_results (22)
Expression_cluster (124)
SAGE_tagSAGE:gctaacggtggagccaaStrandSense
Unambiguously_mapped
SAGE:ctcaacagcaggcgagaStrandSense
Unambiguously_mapped
SAGE:ctcaacagcaStrandSense
Unambiguously_mapped
SAGE:ttcctttaataaatattStrandSense
Unambiguously_mapped
SAGE:tgaaccggccgatgtgtStrandAntisense
SAGE:gctaacggtgStrandSense
Unambiguously_mapped
SAGE:ctcggtaggcStrandAntisense
SAGE:gatatgcacacaaataaStrandAntisense
SAGE:gatatgcacaStrandAntisense
SAGE:ttcctttaatStrandSense
Unambiguously_mapped
Interaction (145)
WBProcessWBbiopr:00000001
Map_infoMapIVPosition-12.9654Error0.187283
PositivePositive_cloneF52C12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (41)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene