WormBase Tree Display for Gene: WBGene00001253
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WBGene00001253 | SMap | S_parent | Sequence | F52C12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | elt-6 | Person_evidence | WBPerson71 | |||||
Sequence_name | F52C12.5 | ||||||||
Molecular_name (3) | |||||||||
Other_name | CELE_F52C12.5 | Accession_evidence | NDB | BX284604 | |||||
Public_name | elt-6 | ||||||||
DB_info | Database | AceView | gene | 4C685 | |||||
WormQTL | gene | WBGene00001253 | |||||||
SignaLink | protein | WBGene00001253 | |||||||
WormFlux | gene | WBGene00001253 | |||||||
NDB | locus_tag | CELE_F52C12.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001253|UniProtKB=G5EGN3 | |||||||
family | PTHR10071 | ||||||||
NCBI | gene | 176993 | |||||||
RefSeq | protein | NM_067743.8 | |||||||
SwissProt | UniProtAcc | G5EGN3 | |||||||
UniProt_GCRP | UniProtAcc | G5EGN3 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | elt | ||||||||
Allele (105) | |||||||||
Strain | WBStrain00036671 | ||||||||
WBStrain00036729 | |||||||||
WBStrain00052004 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (15) | |||||||||
Contained_in_operon | CEOP4050 | ||||||||
Ortholog (31) | |||||||||
Paralog | WBGene00001186 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00001249 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001250 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001251 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001252 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00015981 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00001310 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001311 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Concise_description | elt-6 encodes a GATA transcription factor; ELT-6 is required for proper specification of vulval and seam cell fates, as well as for cell non-autonomous regulation of tail tip morphogenesis; ELT-6 localizes to the nucleus. | Paper_evidence | WBPaper00005609 | |||||
WBPaper00038232 | |||||||||
WBPaper00004833 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 02 May 2013 00:00:00 | ||||||||
Automated_description | Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate commitment; negative regulation of transcription by RNA polymerase II; and positive regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in several structures, including ABarpaapap; ABarpaappa; ABarpaappp; ABprpppppaa; and body wall muscle cell from MS lineage. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F52C12.5 | |||||||
Corresponding_CDS_history | F52C12.5:wp82 | ||||||||
Corresponding_transcript | F52C12.5.1 | ||||||||
Other_sequence (11) | |||||||||
Associated_feature | WBsf019098 | ||||||||
WBsf038793 | |||||||||
WBsf038794 | |||||||||
WBsf645826 | |||||||||
WBsf659958 | |||||||||
WBsf978559 | |||||||||
WBsf995585 | |||||||||
WBsf227984 | |||||||||
WBsf227985 | |||||||||
WBsf227986 | |||||||||
Transcription_factor | WBTranscriptionFactor000591 | ||||||||
Experimental_info | RNAi_result (25) | ||||||||
Expr_pattern (11) | |||||||||
Drives_construct | WBCnstr00005053 | ||||||||
WBCnstr00009223 | |||||||||
WBCnstr00010361 | |||||||||
WBCnstr00015232 | |||||||||
WBCnstr00015233 | |||||||||
WBCnstr00016504 | |||||||||
Construct_product | WBCnstr00006753 | ||||||||
WBCnstr00008174 | |||||||||
Antibody | WBAntibody00000398 | ||||||||
Microarray_results (22) | |||||||||
Expression_cluster (124) | |||||||||
SAGE_tag | SAGE:gctaacggtggagccaa | Strand | Sense | ||||||
Unambiguously_mapped | |||||||||
SAGE:ctcaacagcaggcgaga | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:ctcaacagca | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:ttcctttaataaatatt | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:tgaaccggccgatgtgt | Strand | Antisense | |||||||
SAGE:gctaacggtg | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:ctcggtaggc | Strand | Antisense | |||||||
SAGE:gatatgcacacaaataa | Strand | Antisense | |||||||
SAGE:gatatgcaca | Strand | Antisense | |||||||
SAGE:ttcctttaat | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
Interaction (145) | |||||||||
WBProcess | WBbiopr:00000001 | ||||||||
Map_info | Map | IV | Position | -12.9654 | Error | 0.187283 | |||
Positive | Positive_clone | F52C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (41) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |