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WormBase Tree Display for Gene: WBGene00012968

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Name Class

WBGene00012968SMapS_parentSequenceY48A6B
IdentityVersion1
Name (4)
DB_infoDatabaseAceViewgene3M114
WormQTLgeneWBGene00012968
WormFluxgeneWBGene00012968
NDBlocus_tagCELE_Y48A6B.7
PanthergeneCAEEL|WormBase=WBGene00012968|UniProtKB=Q9XXD0
familyPTHR11079
NCBIgene176533
RefSeqproteinNM_067017.6
TREEFAMTREEFAM_IDTF313782
TrEMBLUniProtAccQ9XXD0
UniProt_GCRPUniProtAccQ9XXD0
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (25)
RNASeq_FPKM (74)
GO_annotation00104244
00104245
00119931
Ortholog (34)
ParalogWBGene00010436Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00020052Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00007440Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012927Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015574Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00016495Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020747Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionY48A6B.7 encodes a cytidine deaminase; by homology the product of Y48A6B.7 is predicted to function in deamination of cytidine to uracil.Paper_evidenceWBPaper00024352
Curator_confirmedWBPerson1843
Date_last_updated25 Feb 2009 00:00:00
Automated_descriptionPredicted to enable guanosine deaminase activity. Predicted to be involved in purine nucleoside catabolic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY48A6B.7
Corresponding_transcriptY48A6B.7.1
Other_sequence (16)
Associated_featureWBsf994241
WBsf1015907
WBsf227541
Experimental_infoRNAi_resultWBRNAi00037222Inferred_automaticallyRNAi_primary
WBRNAi00113544Inferred_automaticallyRNAi_primary
WBRNAi00006717Inferred_automaticallyRNAi_primary
WBRNAi00056866Inferred_automaticallyRNAi_primary
WBRNAi00020728Inferred_automaticallyRNAi_primary
Expr_patternExpr1028625
Expr1160319
Expr2007650
Expr2025890
Microarray_results (19)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00036738:500uM_Heme_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:excretory-cell_larva_enriched
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_larva_enriched
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040134:nhr-49(RNAi)_regulated_protein
WBPaper00042561:smgl-1(RNAi)_downregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
WBPaper00045314:S.aureus-induced_N2
WBPaper00045521:Gender_Neutral
WBPaper00045934:wrn-1(gk99)_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046741:Garlic-Extract_upregulated_mRNA
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00048988:neuron_expressed
WBPaper00049217:DAF-16_downregulated
WBPaper00049334:CE_intestine_enriched
WBPaper00049368:daf-2(e1370)_downregulated
WBPaper00049495:starvation-refeeding_regulated
WBPaper00049498:npr-1(ur89)_regulated_2
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_100-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051039:intestine_enriched
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_specific
WBPaper00051265:F4_hrde-1(tm1200)_downregulated
WBPaper00051265:F4_morc-1(tm6048)_downregulated
WBPaper00051305:vit-2(ac3)_downregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053094:adr-2(ok735)_neuron_downregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053402:cco-1(RNAi)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
WBPaper00053606:N2_vs_elt-2(ca15)_downregulated
WBPaper00053664:ins-11(tm1053)_downregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00053814:25C_upregulated_PY79
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055049:S.gordonii_downregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056284:ints-2(RNAi)_downregulated
WBPaper00056443:DietaryRestriction_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay1
WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
WBPaper00056826:hmc_biased
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057068:Cadmium_upregulated
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00058711:paraquat_downregulated
WBPaper00058711:wdr-5(ok1417)_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00058958:100mGy-irradiation-72h_upregulated
WBPaper00059027:neuron-synapses_depleted
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059735:glucose_downregulated_lpin-1(RNAi)
WBPaper00059739:hira-1(gk835598)_upregulated_adult
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060703:nas-38(ok3407)_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061040:eat-2(ad1116)_upregulated
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061340:AIZ
WBPaper00061340:Excretory_cell
WBPaper00061527:F54D5.3_7003-F54D5.3_7004
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00062056:lin-15B(n744)_downregulated
WBPaper00062056:lin-36(we31)_downregulated
WBPaper00062118:neural-HSF-1_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_downregulated_N2
WBPaper00062345:bortezomib_4h_downregulated_zip-1(jy13)
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064509:static-magnetic-field_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064735:bet-1(uth41)_vs_N2_upregulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065373:sek-1(km4)_downregulated_Ref
WBPaper00065392:Lb.delbrueckii_downregulated
WBPaper00065392:Lb.gasseri_downregulated
WBPaper00065392:Lb.rhamnosus_downregulated
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
WBPaper00065841:79_1
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066005:RAGA-1_degradation_somatic_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_downregulated_WT
cgc4386_cluster_1_1
cgc4489_group_25
WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031703:heme_responsive_7
WBPaper00031832:slr-2_regulated
WBPaper00032062:age_regulated_genes
WBPaper00032165:differentially_expressed_with_age_medoid_4
WBPaper00034757:up_by_oxidative_stress
WBPaper00035560:ahr-1_downregulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-7_regulated
WBPaper00035873:osm-8_regulated
WBPaper00036286:Pattern_I
WBPaper00037695:CC_3-day
WBPaper00037695:LD_3-day
WBPaper00038172:crh-1null_up_regulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00040184:hcf-1down_sir-2.1down_daf-2down
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.5
WBPaper00040821:Au-NP_regulated
WBPaper00040823:alg-1(gk214)_upregulated
WBPaper00040963:TA100_up
WBPaper00040963:TA200_up
WBPaper00040963:TA300_up
WBPaper00040985:AIN-2_asynchronous_intestine
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041174:environmental
WBPaper00041174:genotypic
WBPaper00041174:genotypic_and_environmental
WBPaper00041606:CE_S.aureus_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-exposed_48h
WBPaper00042178:hlh-29(tm284)_upregulated
WBPaper00042234:xpa-1_upregulated
WBPaper00042258:DA1877_upregulated_GravidAdult
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00044091:Bpseudomallei_induced_8h
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00045263:ProLongevity-mtROS_downregulated
WBPaper00045673:colistin_upregulated
WBPaper00045865:biofilm_upregulated_A
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00049311:Ag-MNP_regulated
WBPaper00050515:nipi-3(fr4)_upregulated
WBPaper00053236:daf-16(mgDF50)_regulated_Starved
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053688:E.faecium_downregulated
WBPaper00055899:nitrotriazolone_regulated
Interaction (19)
Map_infoPositivePositive_cloneY48A6BInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII5.85968
ReferenceWBPaper00024352
MethodGene