WormBase Tree Display for Gene: WBGene00015574
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| WBGene00015574 | SMap | S_parent | Sequence | C07G3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | irg-1 | Person_evidence | WBPerson3965 | |||||
| Sequence_name | C07G3.2 | ||||||||
| Molecular_name | C07G3.2 | ||||||||
| C07G3.2.1 | |||||||||
| CE07993 | |||||||||
| Other_name | CELE_C07G3.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | irg-1 | ||||||||
| DB_info | Database | AceView | gene | 5D999 | |||||
| WormQTL | gene | WBGene00015574 | |||||||
| WormFlux | gene | WBGene00015574 | |||||||
| NDB | locus_tag | CELE_C07G3.2 | |||||||
| NCBI | gene | 182379 | |||||||
| RefSeq | protein | NM_071582.5 | |||||||
| TREEFAM | TREEFAM_ID | TF316991 | |||||||
| TrEMBL | UniProtAcc | O16327 | |||||||
| UniProt_GCRP | UniProtAcc | O16327 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 13 Jul 2009 13:51:47 | WBPerson9133 | Name_change | CGC_name | irg-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | irg | ||||||||
| Allele (37) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00027834 | ||||||||
| 00027835 | |||||||||
| 00105960 | |||||||||
| 00105967 | |||||||||
| 00105968 | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00007440 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| WormBase-Compara | |||||||||
| WBGene00020747 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00010436 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012927 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012968 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016495 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020052 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | irg-1 encodes a protein containing a conserved DUF1768 domain, a domain of unknown function found as a stand-alone domain in bacterial and bacteriophage proteins as well as fused to proteins involved in riboflavin biosynthesis in bacteria and plants; irg-1 expression is induced in response to infection with pathogenic Pseudomonas aeruginosa, in a manner independent of the p38 MAPK pathway, but dependent upon the ZIP-2 bZIP transcription factor; irg-1 expression is also induced at a low level in response to cadmium exposure, in a manner that is dependent upon pmk-1. | Paper_evidence | WBPaper00028789 | |||||
| WBPaper00035891 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 08 Feb 2010 00:00:00 | ||||||||
| Automated_description | Involved in antibacterial innate immune response and defense response to Gram-negative bacterium. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C07G3.2 | |||||||
| Corresponding_transcript | C07G3.2.1 | ||||||||
| Other_sequence | CBC16326_1 | ||||||||
| Associated_feature | WBsf231582 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00040026 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010403 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8898 | ||||||||
| Expr1028122 | |||||||||
| Expr1144099 | |||||||||
| Expr2012816 | |||||||||
| Expr2031055 | |||||||||
| Drives_construct | WBCnstr00005926 | ||||||||
| WBCnstr00013591 | |||||||||
| WBCnstr00028740 | |||||||||
| Construct_product | WBCnstr00020134 | ||||||||
| WBCnstr00028740 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (303) | |||||||||
| Interaction (63) | |||||||||
| WBProcess | WBbiopr:00000008 | ||||||||
| WBbiopr:00000039 | |||||||||
| Map_info | Map | V | Position | -10.3139 | Error | 0.017317 | |||
| Positive | Positive_clone | C07G3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (17) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
