WormBase Tree Display for Gene: WBGene00010436
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| WBGene00010436 | SMap | S_parent | Sequence | JC8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | JC8.4 | |||||||
| Molecular_name | JC8.4 | ||||||||
| JC8.4.1 | |||||||||
| CE17987 | |||||||||
| Other_name | CELE_JC8.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | JC8.4 | ||||||||
| DB_info | Database | AceView | gene | 4O9 | |||||
| WormQTL | gene | WBGene00010436 | |||||||
| WormFlux | gene | WBGene00010436 | |||||||
| NDB | locus_tag | CELE_JC8.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010436|UniProtKB=Q95QD6 | |||||||
| family | PTHR11079 | ||||||||
| NCBI | gene | 178281 | |||||||
| RefSeq | protein | NM_070145.3 | |||||||
| TREEFAM | TREEFAM_ID | TF313782 | |||||||
| TrEMBL | UniProtAcc | Q95QD6 | |||||||
| UniProt_GCRP | UniProtAcc | Q95QD6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (12) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00088351 | ||||||||
| 00088352 | |||||||||
| 00088353 | |||||||||
| 00117854 | |||||||||
| Contained_in_operon | CEOP4536 | ||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00012968 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00020052 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00007440 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012927 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015574 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016495 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020747 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | JC8.4 encodes a cytosine deaminase orthologous to Saccharomyces cerevisiae Tad2p, a deaminase that lies, evolutionarily, between cytidine and adenosine deaminases and deaminates adenosine residues in the anticodon of specific yeast tRNAs; loss of JC8.4 activity via RNAi has been reported to result in partially penetrant embryonic lethality. | Paper_evidence | WBPaper00024352 | |||||
| WBPaper00024925 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 25 Feb 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable tRNA-specific adenosine-34 deaminase activity. Predicted to be involved in tRNA wobble adenosine to inosine editing. Is an ortholog of human ADAT2 (adenosine deaminase tRNA specific 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | JC8.4 | |||||||
| Corresponding_transcript | JC8.4.1 | ||||||||
| Other_sequence (16) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00033793 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00049572 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016357 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061636 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014000 | ||||||||
| Expr1034552 | |||||||||
| Expr1153299 | |||||||||
| Expr2004625 | |||||||||
| Expr2022851 | |||||||||
| Drives_construct | WBCnstr00031418 | ||||||||
| Construct_product | WBCnstr00031418 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (101) | |||||||||
| SAGE_tag | SAGE:ctgagatggt | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:ccttgtcgga | Strand | Antisense | |||||||
| SAGE:ctgaaaacattctacga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ctgaaaacat | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gcgacagatc | Strand | Antisense | |||||||
| Interaction (18) | |||||||||
| Map_info | Positive | Positive_clone | JC8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 8.48522 | |||||||
| Reference | WBPaper00024352 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
