WormBase Tree Display for Gene: WBGene00010436

WBGene00010436 SMap: S_parent: Sequence: JC8
  Identity: Version: 1
    Name: Sequence_name: JC8.4
      Molecular_name: JC8.4
        JC8.4.1
        CE17987
      Other_name: CELE_JC8.4 Accession_evidence: NDB BX284604
      Public_name: JC8.4
    DB_info: Database: AceView gene 4O9
        WormQTL gene WBGene00010436
        WormFlux gene WBGene00010436
        NDB locus_tag CELE_JC8.4
        Panther gene CAEEL|WormBase=WBGene00010436|UniProtKB=Q95QD6
          family PTHR11079
        NCBI gene 178281
        RefSeq protein NM_070145.3
        TREEFAM TREEFAM_ID TF313782
        TrEMBL UniProtAcc Q95QD6
        UniProt_GCRP UniProtAcc Q95QD6
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (12)
    RNASeq_FPKM (74)
    GO_annotation: 00088351
      00088352
      00088353
      00117854
    Contained_in_operon: CEOP4536
    Ortholog: WBGene00080625 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00142070 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00163880 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00154221 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00147675 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00126237 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00124155 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00207091 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00219090 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00214431 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00055896 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00077379 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00271426 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00224966 Brugia malayi From_analysis: WormBase-Compara
      CSP28.g13844 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g6979 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g5288 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g14425 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g5576 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      Cni-JC8.4 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold589.g5063 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00041.g2222 Caenorhabditis sinica From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03068 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g19027 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40141900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g12253 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245035 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00304420 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00260118 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00302151 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003572 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0038491 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-041014-360 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:21172 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1914007 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1309642 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00012968 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00020052 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00007440 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00012927 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015574 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016495 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020747 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: JC8.4 encodes a cytosine deaminase orthologous to Saccharomyces cerevisiae Tad2p, a deaminase that lies, evolutionarily, between cytidine and adenosine deaminases and deaminates adenosine residues in the anticodon of specific yeast tRNAs; loss of JC8.4 activity via RNAi has been reported to result in partially penetrant embryonic lethality. Paper_evidence: WBPaper00024352
            WBPaper00024925
          Curator_confirmed: WBPerson1843
          Date_last_updated: 25 Feb 2009 00:00:00
      Automated_description: Predicted to enable tRNA-specific adenosine-34 deaminase activity. Predicted to be involved in tRNA wobble adenosine to inosine editing. Is an ortholog of human ADAT2 (adenosine deaminase tRNA specific 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: JC8.4
    Corresponding_transcript: JC8.4.1
    Other_sequence (16)
  Experimental_info: RNAi_result: WBRNAi00033793 Inferred_automatically: RNAi_primary
      WBRNAi00049572 Inferred_automatically: RNAi_primary
      WBRNAi00016357 Inferred_automatically: RNAi_primary
      WBRNAi00061636 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014000
      Expr1034552
      Expr1153299
      Expr2004625
      Expr2022851
    Drives_construct: WBCnstr00031418
    Construct_product: WBCnstr00031418
    Microarray_results (15)
    Expression_cluster (101)
    SAGE_tag: SAGE:ctgagatggt Strand: Sense
        Unambiguously_mapped
      SAGE:ccttgtcgga Strand: Antisense
      SAGE:ctgaaaacattctacga Strand: Sense
        Unambiguously_mapped
      SAGE:ctgaaaacat Strand: Sense
        Unambiguously_mapped
      SAGE:gcgacagatc Strand: Antisense
    Interaction (18)
  Map_info: Positive: Positive_clone: JC8 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 8.48522
  Reference: WBPaper00024352
    WBPaper00038491
    WBPaper00055090
  Method: Gene