WormBase Tree Display for Gene: WBGene00012927
expand all nodes | collapse all nodes | view schema
| WBGene00012927 | SMap | S_parent | Sequence | Y47D3A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y47D3A.14 | |||||||
| Molecular_name | Y47D3A.14 | ||||||||
| Y47D3A.14.1 | |||||||||
| CE30359 | |||||||||
| Other_name | CELE_Y47D3A.14 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | Y47D3A.14 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (23) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00096117 | ||||||||
| 00096118 | |||||||||
| 00096119 | |||||||||
| 00119894 | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00007440 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00010436 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012968 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015574 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016495 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020052 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020747 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | Y47D3A.14 encodes a cytosine deaminase orthologous to Saccharomyces cerevisiae Tad3p, a deaminase that lies, evolutionarily, between cytidine and adenosine deaminases and deaminates adenosine residues in the anticodon of specific yeast tRNAs. | Paper_evidence | WBPaper00024352 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 25 Feb 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable catalytic activity. Predicted to contribute to tRNA-specific adenosine-34 deaminase activity. Predicted to be located in cytoplasm and nucleus. Expressed in pharyngeal gland cell and pm7. Human ortholog(s) of this gene implicated in neurodevelopmental disorder with brain abnormalities, poor growth, and dysmorphic facies. Is an ortholog of human ADAT3 (adenosine deaminase tRNA specific 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0081099 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:25151) | ||||
| Molecular_info | Corresponding_CDS | Y47D3A.14 | |||||||
| Corresponding_CDS_history | Y47D3A.14:wp74 | ||||||||
| Corresponding_transcript | Y47D3A.14.1 | ||||||||
| Other_sequence (15) | |||||||||
| Associated_feature | WBsf651498 | ||||||||
| WBsf994310 | |||||||||
| WBsf994311 | |||||||||
| WBsf994312 | |||||||||
| WBsf1015955 | |||||||||
| WBsf1015956 | |||||||||
| WBsf227559 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056733 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00006869 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056734 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr10188 | ||||||||
| Expr1015009 | |||||||||
| Expr1035724 | |||||||||
| Expr1160200 | |||||||||
| Expr2007603 | |||||||||
| Expr2025839 | |||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (82) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Positive | Positive_clone | Y47D3A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | 7.87088 | |||||||
| Reference | WBPaper00024352 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
